CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cagra.0210s0018 *(Capsella grandiflora)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00010 (HLH)	IPR001092	Cagra.0210s0018	T049196_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK05923.1 M01121_2.00	Cannabis sativa	NNNNNNN	NNNNNNN	PBM Lambert et al.(2019) pTH11368	0.901	0.961
BPE M01700_2.00	Arabidopsis thaliana	NCACGTNNN	NNNACGTGN	PBM Weirauch et al.(2014) pTH7290	0.868	0.804
BHLH78 M01713_2.00	Arabidopsis thaliana	GCACGTGC	GCACGTGC	PBM Weirauch et al.(2014) pTH7666	0.868	0.804
BPE M06726_2.00	Arabidopsis thaliana	NNNNNNNNCACGTGNNNNNWB	VWNNNNNCACGTGNNNNNNNN	Dap-seq OMalley et al.(2016) bHLH31_col	0.868	0.804
gw1.270.82.1 M01758_2.00	Physcomitrella patens	NCACGTGH	DCACGTGN	PBM Weirauch et al.(2014) pTH8457	0.855	0.784
BHLH74 M06720_2.00	Arabidopsis thaliana	SDHSDNDNNCACGTGVNNNNW	WNNNNBCACGTGNNHNHSDHS	Dap-seq OMalley et al.(2016) bHLH74_col_a	0.855	0.784
BHLH74 M06721_2.00	Arabidopsis thaliana	CACGTGAY	RTCACGTG	Dap-seq OMalley et al.(2016) bHLH74_colamp_a	0.855	0.784
BHLH77 M06736_2.00	Arabidopsis thaliana	NKCACGTGVHNWHNB	VNDWNDBCACGTGMN	Dap-seq OMalley et al.(2016) bHLH77_col_a	0.855	0.784
BHLH49 M01052_2.00	Arabidopsis thaliana	NNCACGTGCN	NGCACGTGNN	PBM Sullivan et al.(2014) pTH7309	0.842	0.745
PK06517.1 M01122_2.00	Cannabis sativa	NCACGTGC	GCACGTGN	PBM Lambert et al.(2019) pTH10104	0.842	0.745
BEE2 M01708_2.00	Arabidopsis thaliana	NNCACGTGNN	NNCACGTGNN	PBM Weirauch et al.(2014) pTH8094	0.839	0.706
AT2G18300 M01702_2.00	Arabidopsis thaliana	NBCACGTGCNNN	NNNGCACGTGVN	PBM Weirauch et al.(2014) pTH7289	0.839	0.686
AT2G18300 M06729_2.00	Arabidopsis thaliana	ACTGGT	ACCAGT	Dap-seq OMalley et al.(2016) bHLH64_col_a	0.839	0.686
For this family, TFs with SR scores > 0.838* will likely have a similar motif*