Ciclev10016289m.g (Citrus clementina)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Ciclev10016289m.g T049505_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20225.1
M01128_2.00 		Cannabis sativa
NCACGTGVN
NBCACGTGN		 PBM
Lambert et al.(2019)
pTH11274 		0.884 0.898
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10016289m bHLH 74 122

Links

Other bHLH family TFs
Other Citrus clementina TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_10743 Aegilops tauschii F775_10743 I
F775_31139 Aegilops tauschii F775_31139 I
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I
AMTR_s00045p00076020 Amborella trichopoda AMTR_s00045p00076020 I
AMTR_s00106p00142470 Amborella trichopoda AMTR_s00106p00142470 I
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I
SPL12 Arabidopsis lyrata scaffold_503227.1 I
SPL1 Arabidopsis thaliana AT2G47070 D
SPL12 Arabidopsis thaliana AT3G60030 D
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I
Bostr.25993s0559 Boechera stricta Bostr.25993s0559 I
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I
Bo4g005730 Brassica oleracea Bo4g005730 I
Bo4g015800 Brassica oleracea Bo4g015800 I
Bo4g191350 Brassica oleracea Bo4g191350 I
Bra004674 Brassica rapa Bra004674 I
Bra016891 Brassica rapa Bra016891 I
Bra041037 Brassica rapa Bra041037 I
PK06791.1 Cannabis sativa PK06791.1 D
PK11310.1 Cannabis sativa PK11310.1 I
PK18312.1 Cannabis sativa PK18312.1 I
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I
Carubv10016658m.g Capsella rubella Carubv10016658m.g I
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I
Ca_03548 Cicer arietinum Ca_03548 I
Ca_07299 Cicer arietinum Ca_07299 I
Ca_10879 Cicer arietinum Ca_10879 I
Ca_16243 Cicer arietinum Ca_16243 I
Ca_24655 Cicer arietinum Ca_24655 I
Cla021411 Citrullus lanatus Cla021411 I
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I
Cucsa.242790 Cucumis sativus Cucsa.242790 I
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I
Eucgr.K01828 Eucalyptus grandis Eucgr.K01828 I
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I
GLYMA01G15134 Glycine max GLYMA01G15134 I
GLYMA02G01160 Glycine max GLYMA02G01160 I
GLYMA02G30670 Glycine max GLYMA02G30670 I
GLYMA03G29901 Glycine max GLYMA03G29901 I
GLYMA06G36140 Glycine max GLYMA06G36140 I
GLYMA09G09790 Glycine max GLYMA09G09790 I
GLYMA10G01211 Glycine max GLYMA10G01211 I
GLYMA11G16556 Glycine max GLYMA11G16556 I
GLYMA12G27330 Glycine max GLYMA12G27330 I
GLYMA15G21860 Glycine max GLYMA15G21860 I
GLYMA18G36960 Glycine max GLYMA18G36960 I
GLYMA19G32800 Glycine max GLYMA19G32800 I
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I
Gorai.007G362000 Gossypium raimondii Gorai.007G362000 I
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I
MLOC_4830 Hordeum vulgare MLOC_4830 I
LPERR03G34030 Leersia perrieri LPERR03G34030 I
LPERR04G17030 Leersia perrieri LPERR04G17030 I
LPERR08G16940 Leersia perrieri LPERR08G16940 I
LPERR09G10900 Leersia perrieri LPERR09G10900 I
Lus10004523.g Linum usitatissimum Lus10004523.g I
Lus10010071.g Linum usitatissimum Lus10010071.g I
Lus10012020.g Linum usitatissimum Lus10012020.g I
Lus10016275.g Linum usitatissimum Lus10016275.g I
Lus10021034.g Linum usitatissimum Lus10021034.g I
Lus10023818.g Linum usitatissimum Lus10023818.g I
chr1.CM0122.330.nc Lotus japonicus chr1.CM0122.330.nc I
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I
MDP0000156994 Malus domestica MDP0000156994 I
MDP0000180408 Malus domestica MDP0000180408 I
MDP0000180409 Malus domestica MDP0000180409 I
MDP0000262141 Malus domestica MDP0000262141 I
MDP0000297978 Malus domestica MDP0000297978 I
MDP0000589558 Malus domestica MDP0000589558 I
MDP0000861601 Malus domestica MDP0000861601 I
MDP0000919693 Malus domestica MDP0000919693 I
MDP0000919694 Malus domestica MDP0000919694 I
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I
MTR_1g053715 Medicago truncatula MTR_1g053715 I
MTR_1g086250 Medicago truncatula MTR_1g086250 I
MTR_7g092930 Medicago truncatula MTR_7g092930 I
MTR_7g444860 Medicago truncatula MTR_7g444860 I
MTR_8g463140 Medicago truncatula MTR_8g463140 I
mgf001202m Mimulus guttatus mgf001202m I
mgf001295m Mimulus guttatus mgf001295m I
mgf009459m Mimulus guttatus mgf009459m I
mgf012995m Mimulus guttatus mgf012995m I
mgf025134m Mimulus guttatus mgf025134m I
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I
GSMUA_Achr3G11170_001 Musa acuminata GSMUA_Achr3G11170_001 I
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I
GSMUA_Achr4G03880_001 Musa acuminata GSMUA_Achr4G03880_001 I
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I
GSMUA_Achr7G02020_001 Musa acuminata GSMUA_Achr7G02020_001 I
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I
GSMUA_Achr9G22260_001 Musa acuminata GSMUA_Achr9G22260_001 I
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I
OBART03G39900 Oryza barthii OBART03G39900 I
OBART04G20940 Oryza barthii OBART04G20940 I
OBART07G15570 Oryza barthii OBART07G15570 I
OBART08G20010 Oryza barthii OBART08G20010 N
OBART09G14800 Oryza barthii OBART09G14800 I
OB03G47050 Oryza brachyantha OB03G47050 I
OB04G27960 Oryza brachyantha OB04G27960 I
OB08G26920 Oryza brachyantha OB08G26920 I
OB08G27190 Oryza brachyantha OB08G27190 I
OB09G21350 Oryza brachyantha OB09G21350 N
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I
BGIOSGA016888 Oryza indica BGIOSGA016888 I
BGIOSGA024253 Oryza indica BGIOSGA024253 I
BGIOSGA029541 Oryza indica BGIOSGA029541 I
OLONG_015903 Oryza longistaminata OLONG_015903 N
OLONG_020138 Oryza longistaminata OLONG_020138 N
OMERI03G36740 Oryza meridionalis OMERI03G36740 I
OMERI04G17360 Oryza meridionalis OMERI04G17360 I
OMERI07G12270 Oryza meridionalis OMERI07G12270 I
OMERI09G11520 Oryza meridionalis OMERI09G11520 I
ONIVA03G41820 Oryza nivara ONIVA03G41820 I
ONIVA04G19190 Oryza nivara ONIVA04G19190 I
ONIVA07G14170 Oryza nivara ONIVA07G14170 I
ONIVA08G22610 Oryza nivara ONIVA08G22610 I
ONIVA09G15400 Oryza nivara ONIVA09G15400 I
OPUNC03G37130 Oryza punctata OPUNC03G37130 I
OPUNC03G37170 Oryza punctata OPUNC03G37170 I
OPUNC04G18620 Oryza punctata OPUNC04G18620 I
OPUNC08G18140 Oryza punctata OPUNC08G18140 I
OPUNC09G13250 Oryza punctata OPUNC09G13250 I
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I
SPL6 Oryza sativa OS03G0833300 I
SPL7 Oryza sativa OS04G0551500 I
SPL14 Oryza sativa OS08G0509600 I
OS09G0491532 Oryza sativa OS09G0491532 I
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I
Pavir.Fb01946 Panicum virgatum Pavir.Fb01946 I
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I
Pavir.J01500 Panicum virgatum Pavir.J01500 I
Pavir.J11258 Panicum virgatum Pavir.J11258 I
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I
Pm002693 Prunus mume Pm002693 I
Pm007035 Prunus mume Pm007035 I
Pm008474 Prunus mume Pm008474 I
Pm008475 Prunus mume Pm008475 I
Pm017778 Prunus mume Pm017778 I
PRUPE_ppa000690mg Prunus persica PRUPE_ppa000690mg I
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I
28211.m000132 Ricinus communis 28211.m000132 I
29269.m000250 Ricinus communis 29269.m000250 I
29889.m003388 Ricinus communis 29889.m003388 I
30076.m004574 Ricinus communis 30076.m004574 I
30174.m008805 Ricinus communis 30174.m008805 I
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I
Si013870m.g Setaria italica Si013870m.g I
Si030195m.g Setaria italica Si030195m.g I
Si034095m.g Setaria italica Si034095m.g I
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I
Solyc10g078700.1 Solanum lycopersicum Solyc10g078700.1 I
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I
PGSC0003DMG400011433 Solanum tuberosum PGSC0003DMG400011433 I
Sb01g002530 Sorghum bicolor Sb01g002530 I
Sb02g028420 Sorghum bicolor Sb02g028420 I
Sb07g027740 Sorghum bicolor Sb07g027740 I
TCM_004922 Theobroma cacao TCM_004922 I
TCM_005620 Theobroma cacao TCM_005620 I
TCM_021482 Theobroma cacao TCM_021482 I
TCM_024873 Theobroma cacao TCM_024873 I
TCM_031595 Theobroma cacao TCM_031595 I
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I
Traes_5BL_3503725F1 Triticum aestivum Traes_5BL_3503725F1 I
Traes_5BL_96D5EA4EE Triticum aestivum Traes_5BL_96D5EA4EE I
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I
Traes_7DS_E2A582546 Triticum aestivum Traes_7DS_E2A582546 N
TRIUR3_23872 Triticum urartu TRIUR3_23872 I
TRIUR3_33729 Triticum urartu TRIUR3_33729 I
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I
GRMZM2G126018 Zea mays GRMZM2G126018 I
GRMZM2G156756 Zea mays GRMZM2G156756 I
GRMZM2G160917 Zea mays GRMZM2G160917 I
GRMZM2G307588 Zea mays GRMZM2G307588 I
GRMZM2G460544 Zea mays GRMZM2G460544 N