Lus10014300.g (Linum usitatissimum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Lus10014300.g T050190_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.881 0.863
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.881 0.863
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.881 0.863
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.864 0.863
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.864 0.863
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.864 0.824
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.864 0.824
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.852 0.843
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.852 0.843
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.852 0.843
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.851 0.784
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.839 0.824
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.839 0.824
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10014300 bHLH 132 182

Links

Other bHLH family TFs
Other Linum usitatissimum TFs

757 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g03797 Acanthocheilonema viteae nAv.1.0.1.g03797 I
ANCCAN_24528 Ancylostoma caninum ANCCAN_24528 I
ANCCEY_05532 Ancylostoma ceylanicum ANCCEY_05532 I
ANCDUO_15498 Ancylostoma duodenale ANCDUO_15498 I
ASIM_0001463201 Anisakis simplex ASIM_0001463201 I
ASU_10535 Ascaris suum ASU_10535 I
Bm3354 Brugia malayi Bm3354 I
BXY_0383300 Bursaphelenchus xylophilus BXY_0383300 I
CBN13459 Caenorhabditis brenneri CBN13459 I
CBG18919 Caenorhabditis briggsae CBG18919 I
bcl-11 Caenorhabditis elegans WBGene00017430 D
CJA41396 Caenorhabditis japonica CJA41396 I
CRE30875 Caenorhabditis remanei CRE30875 I
DICVIV_00143 Dictyocaulus viviparus DICVIV_00143 I
nDi.2.2.2.g00707 Dirofilaria immitis nDi.2.2.2.g00707 I
DME_0000006201 Dracunculus medinensis DME_0000006201 I
EVEC_0001125701 Enterobius vermicularis EVEC_0001125701 I
GPLIN_001288500 Globodera pallida GPLIN_001288500 I
HCOI01698200 Haemonchus contortus HCOI01698200 I
HCOI00904800 Haemonchus contortus HCOI00904800 I
HPLM_0001331501 Haemonchus placei HPLM_0001331501 I
nLs.2.1.2.g09142 Litomosoides sigmodontis nLs.2.1.2.g09142 I
LOAG_18740 Loa loa LOAG_18740 I
MhA1_Contig454.frz3.fgene1 Meloidogyne hapla MhA1_Contig454.frz3.fgene1 I
Minc07594 Meloidogyne incognita Minc07594 I
NECAME_02245 Necator americanus NECAME_02245 I
OFLC_0000354401 Onchocerca flexuosa OFLC_0000354401 I
WBGene00244008 Onchocerca volvulus WBGene00244008 I
PTRK_0001160400 Parastrongyloides trichosuri PTRK_0001160400 I
scaffold248-EXSNAP2012.2 Pristionchus exspectatus scaffold248-EXSNAP2012.2 I
PPA20237 Pristionchus pacificus PPA20237 I
RSKR_0000889800 Rhabditophanes kr3021 RSKR_0000889800 I
SBAD_0000338201 Soboliphyme baturini SBAD_0000338201 I
L596_g14520 Steinernema carpocapsae L596_g14520 I
L889_g19350 Steinernema feltiae L889_g19350 I
L898_g13372 Steinernema monticolum L898_g13372 I
L892_g10848 Steinernema scapterisci L892_g10848 I
SPAL_0001358300 Strongyloides papillosus SPAL_0001358300 I
SSTP_0000584500 Strongyloides stercoralis SSTP_0000584500 I
SVE_0953600 Strongyloides venezuelensis SVE_0953600 I
SMUV_0000624601 Syphacia muris SMUV_0000624601 I
TELCIR_04334 Teladorsagia circumcincta TELCIR_04334 I
TELCIR_24378 Teladorsagia circumcincta TELCIR_24378 I
TCNE_0001279201 Toxocara canis TCNE_0001279201 I
D917_09068 Trichinella nativa D917_09068 I
EFV59674 Trichinella spiralis EFV59674 I
TMUE_s0041001100 Trichuris muris TMUE_s0041001100 I
D918_08675 Trichuris suis D918_08675 I
WUBG_02612 Wuchereria bancrofti WUBG_02612 I