Pavir.J25484 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.J25484 T050916_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42280
M06733_2.00 		Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH130_col_a 		0.867 0.961
BHLH122
M06724_2.00 		Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN		 Dap-seq
OMalley et al.(2016)
bHLH122_col100_a 		0.844 0.902
BHLH122
M06725_2.00 		Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a 		0.844 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J25484.1.p bHLH 304 354

Links

Other bHLH family TFs
Other Panicum virgatum TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.000
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I 0.000
ERF023 Arabidopsis thaliana AT1G01250 D 0.000
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I 0.000
Bo5g002600 Brassica oleracea Bo5g002600 I 0.000
Bo8g117810 Brassica oleracea Bo8g117810 I 0.000
Bra032630 Brassica rapa Bra032630 I 0.000
Bra033274 Brassica rapa Bra033274 I 0.000
PK15554.1 Cannabis sativa PK15554.1 I 0.000
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I 0.000
Carubv10010347m.g Capsella rubella Carubv10010347m.g I 0.000
Ca_01325 Cicer arietinum Ca_01325 I 0.000
Ca_17638 Cicer arietinum Ca_17638 I 0.000
Ciclev10022410m.g Citrus clementina Ciclev10022410m.g I 0.000
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I 0.000
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I 0.000
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I 0.000
GLYMA19G44580 Glycine max GLYMA19G44580 I 0.000
GLYMA16G02680 Glycine max GLYMA16G02680 I 0.000
GLYMA03G41910 Glycine max GLYMA03G41910 I 0.000
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.000
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I 0.000
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I 0.000
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I 0.000
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.000
MTR_8g027465 Medicago truncatula MTR_8g027465 I 0.000
mgf020568m Mimulus guttatus mgf020568m I 0.000
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I 0.000
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I 0.000
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I 0.000
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I 0.000
Pm018354 Prunus mume Pm018354 I 0.000
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I 0.000
29742.m001400 Ricinus communis 29742.m001400 I 0.000
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I 0.000
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I 0.000
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.000
PGSC0003DMG400007036 Solanum tuberosum PGSC0003DMG400007036 N 0.000
TCM_005130 Theobroma cacao TCM_005130 I 0.000
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.000