Alligator_sinensis_CCG002912.1 (Alligator sinensis)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Alligator_sinensis_CCG002912.1 T069834_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Atf3
M00758_2.00 		Mus musculus
NNRTKAYNN
NNRTMAYNN		 PBM
Weirauch et al.(2013)
pTH2684 		0.927 0.952
Atf3
M01807_2.00 		Mus musculus
GATGACGY
RCGTCATC		 PBM
Weirauch et al.(2014)
pTH5018 		0.927 0.952
Atf3
M08825_2.00 		Mus musculus
VTGACTCAB
VTGAGTCAB		 Misc
Kulakovskiy et al.(2013)
ATF3_MOUSE.H11MO.0.A 		0.927 0.952
JDP2
M02836_2.00 		Homo sapiens
ATGASTCAT
ATGASTCAT		 SELEX
Jolma et al.(2013)
JDP2_1 		0.881 0.742
JDP2
M02837_2.00 		Homo sapiens
NRTGACGTCATB
VATGACGTCAYN		 SELEX
Jolma et al.(2013)
JDP2_2 		0.881 0.742
JDP2
M02838_2.00 		Homo sapiens
ATGASTCAT
ATGASTCAT		 SELEX
Jolma et al.(2013)
JDP2_3 		0.881 0.742
JDP2
M02839_2.00 		Homo sapiens
NRTGACGTCATN
NATGACGTCAYN		 SELEX
Jolma et al.(2013)
JDP2_4 		0.881 0.742
JDP2
M04285_2.00 		Homo sapiens
NATGASTCATV
BATGASTCATN		 SELEX
Yin et al.(2017)
JDP2_eDBD_HT-SELEX_1 		0.881 0.742
JDP2
M04286_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
JDP2_eDBD_HT-SELEX_2 		0.881 0.742
JDP2
M04289_2.00 		Homo sapiens
NRTGMSKCAYN
NRTGMSKCAYN		 SELEX
Yin et al.(2017)
JDP2_FL_HT-SELEX_1 		0.881 0.742
JDP2
M04290_2.00 		Homo sapiens
NRTKACRTMAYN
NRTKAYGTMAYN		 SELEX
Yin et al.(2017)
JDP2_FL_HT-SELEX_2 		0.881 0.742
JDP2
M04287_2.00 		Homo sapiens
BATGASTCAYN
NRTGASTCATV		 SELEX
Yin et al.(2017)
JDP2_eDBD_Methyl-HT-SELEX_1 		0.881 0.742
JDP2
M04288_2.00 		Homo sapiens
NRTGACRTCAYN
NRTGAYGTCAYN		 SELEX
Yin et al.(2017)
JDP2_eDBD_Methyl-HT-SELEX_2 		0.881 0.742
JDP2
M04291_2.00 		Homo sapiens
NRTGASTCAYN
NRTGASTCAYN		 SELEX
Yin et al.(2017)
JDP2_FL_Methyl-HT-SELEX_1 		0.881 0.742
JDP2
M04292_2.00 		Homo sapiens
NVTKACRTCAYN
NRTGAYGTMABN		 SELEX
Yin et al.(2017)
JDP2_FL_Methyl-HT-SELEX_2 		0.881 0.742
Jdp2
M00125_2.00 		Mus musculus
NRTGAYDNNN
NNNHRTCAYN		 PBM
Badis et al.(2009)
Jundm2_0911 		0.879 0.742
Jdp2
M01810_2.00 		Mus musculus
NNTGACGYMW
WKRCGTCANN		 PBM
Weirauch et al.(2014)
pTH5464 		0.879 0.742
Jdp2
M02861_2.00 		Mus musculus
ATGASTCAT
ATGASTCAT		 SELEX
Jolma et al.(2013)
Jdp2_1 		0.879 0.742
Jdp2
M02862_2.00 		Mus musculus
VATGACGTCAYN
NRTGACGTCATB		 SELEX
Jolma et al.(2013)
Jdp2_2 		0.879 0.742
Jdp2
M10033_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$JDP2_03 		0.879 0.742
ATF3
M04321_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
ATF3_eDBD_HT-SELEX 		0.823 0.532
ATF3
M04323_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
ATF3_FL_HT-SELEX 		0.823 0.532
ATF3
M04032_2.00 		Homo sapiens
RTGACGTCAK
MTGACGTCAY		 SELEX
Rodriguez-Martinez et al.(2017)
ATF3.1 		0.823 0.532
ATF3
M04033_2.00 		Homo sapiens
RTGACTCAY
RTGAGTCAY		 SELEX
Rodriguez-Martinez et al.(2017)
ATF3.2 		0.823 0.532
ATF3
M07822_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
GM12878_ATF3_HudsonAlpha 		0.823 0.532
ATF3
M07823_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_ATF3_HudsonAlpha 		0.823 0.532
ATF3
M07824_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_ATF3_HudsonAlpha 		0.823 0.532
ATF3
M07825_2.00 		Homo sapiens
VRTSACGTVR
YBACGTSAYB		 ChIP-seq
Gerstein et al.(2012)
K562_ATF3_Harvard 		0.823 0.532
ATF3
M08187_2.00 		Homo sapiens
GTCACGTG
CACGTGAC		 ChIP-seq
Contrino et al.(2012)
Mv41 		0.823 0.532
ATF3
M08188_2.00 		Homo sapiens
NRTGASTCAY
RTGASTCAYN		 ChIP-seq
Contrino et al.(2012)
Mv43 		0.823 0.532
ATF3
M08801_2.00 		Homo sapiens
RRTSACGTVRB
VYBACGTSAYY		 Misc
Kulakovskiy et al.(2013)
ATF3_HUMAN.H11MO.0.A 		0.823 0.532
ATF3
M09489_2.00 		Homo sapiens
NVTGASTCABNN
NNVTGASTCABN		 Misc
Heinz et al.(2010)
GBM-ATF3_GSE33912 		0.823 0.532
ATF3
M09977_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_02 		0.823 0.532
ATF3
M09978_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_05 		0.823 0.532
ATF3
M09979_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_Q6_01 		0.823 0.532
ATF3
M09980_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_Q6_02 		0.823 0.532
ATF3
M09981_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_Q6 		0.823 0.532
ATF3
M04322_2.00 		Homo sapiens
NRTGACRTCAYH
DRTGAYGTCAYN		 SELEX
Yin et al.(2017)
ATF3_eDBD_Methyl-HT-SELEX 		0.823 0.532
ATF3
M04324_2.00 		Homo sapiens
NRTGACRTCAYH
DRTGAYGTCAYN		 SELEX
Yin et al.(2017)
ATF3_FL_Methyl-HT-SELEX 		0.823 0.532
Atf3
M03648_2.00 		Drosophila melanogaster
NRTKACGTMAYN
NRTKACGTMAYN		 SELEX
Nitta et al.(2015)
Atf3_1 		0.787 0.581
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG002912.1 bZIP 84 145

Links

Other bZIP family TFs
Other Alligator sinensis TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A_02548 Schistosoma haematobium A_02548 N
Smp_077500 Schistosoma mansoni Smp_077500 N
SROB_0001340001 Schistosoma rodhaini SROB_0001340001 N
TRE_0000571301 Trichobilharzia regenti TRE_0000571301 N