Gfo_R012905 (Geospiza fortis)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Gfo_R012905 T070223_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Batf
M08829_2.00 		Mus musculus
NWSASTCAWHNNDDDANH
DNTHHHNNDWTGASTSWN		 Misc
Kulakovskiy et al.(2013)
BATF_MOUSE.H11MO.0.A 		0.866 0.873
Batf
M09495_2.00 		Mus musculus
VTGASTCABH
DVTGASTCAB		 Misc
Heinz et al.(2010)
Th17-BATF_GSE39756 		0.866 0.873
BATF
M04307_2.00 		Homo sapiens
NVVYGMCACN
NGTGKCRBBN		 SELEX
Yin et al.(2017)
BATF_FL_HT-SELEX 		0.855 0.857
BATF
M07821_2.00 		Homo sapiens
TBASTCAWWNYDRRA
TYYHRNWWTGASTVA		 ChIP-seq
Gerstein et al.(2012)
GM12878_BATF_HudsonAlpha 		0.855 0.857
BATF
M08799_2.00 		Homo sapiens
NWBASTCAWWHHRRRAVH
DBTYYYDDWWTGASTVWN		 Misc
Kulakovskiy et al.(2013)
BATF_HUMAN.H11MO.0.A 		0.855 0.857
BATF
M09971_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BATF_01 		0.855 0.857
BATF
M09972_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BATF_02 		0.855 0.857
BATF
M09973_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BATF_03 		0.855 0.857
BATF
M09974_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BATF_04 		0.855 0.857
BATF
M04308_2.00 		Homo sapiens
NVVYGACACN
NGTGTCRBBN		 SELEX
Yin et al.(2017)
BATF_FL_Methyl-HT-SELEX 		0.855 0.857
BATF3
M02833_2.00 		Homo sapiens
YGATGACGTCATCA
TGATGACGTCATCR		 SELEX
Jolma et al.(2013)
BATF3_1 		0.822 0.667
BATF3
M04268_2.00 		Homo sapiens
BRTGACGTCABN
NVTGACGTCAYV		 SELEX
Yin et al.(2017)
BATF3_eDBD_HT-SELEX 		0.822 0.667
BATF3
M04270_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
BATF3_FL_HT-SELEX 		0.822 0.667
BATF3
M04025_2.00 		Homo sapiens
GRTGACGTCAYC
GRTGACGTCAYC		 SELEX
Rodriguez-Martinez et al.(2017)
BATF3.1 		0.822 0.667
BATF3
M04026_2.00 		Homo sapiens
GRTGACGTGGS
SCCACGTCAYC		 SELEX
Rodriguez-Martinez et al.(2017)
BATF3.2 		0.822 0.667
BATF3
M08794_2.00 		Homo sapiens
NHSTCADWNDGAAASHN
NDSTTTCHNWHTGASDN		 Misc
Kulakovskiy et al.(2013)
BATF3_HUMAN.H11MO.0.B 		0.822 0.667
BATF3
M09962_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BATF3_02 		0.822 0.667
BATF3
M04269_2.00 		Homo sapiens
NRTGACRTCAYH
DRTGAYGTCAYN		 SELEX
Yin et al.(2017)
BATF3_eDBD_Methyl-HT-SELEX 		0.822 0.667
BATF3
M04271_2.00 		Homo sapiens
NRTGACRTCAYN
NRTGAYGTCAYN		 SELEX
Yin et al.(2017)
BATF3_FL_Methyl-HT-SELEX 		0.822 0.667
Batf3
M08826_2.00 		Mus musculus
NHSTCADWNDGAAASHN
NDSTTTCHNWHTGASDN		 Misc
Kulakovskiy et al.(2013)
BATF3_MOUSE.H11MO.0.A 		0.814 0.619
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R012905 bZIP 26 88

Links

Other bZIP family TFs
Other Geospiza fortis TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.6__73__AT5G01380.1 Arabidopsis lyrata fgenesh2_kg.6__73__AT5G01380.1 N
Al_scaffold_0004_2382 Arabidopsis lyrata Al_scaffold_0004_2382 N
GT-3B Arabidopsis thaliana AT2G38250 N
Bostr.6251s0108 Boechera stricta Bostr.6251s0108 N
Bo3g001460 Brassica oleracea Bo3g001460 N
Bo3g032310 Brassica oleracea Bo3g032310 N
Bo9g186070 Brassica oleracea Bo9g186070 N
Bra000046 Brassica rapa Bra000046 N
Bra005127 Brassica rapa Bra005127 N
Bra005688 Brassica rapa Bra005688 N
PK23483.1 Cannabis sativa PK23483.1 N
Cagra.4190s0013 Capsella grandiflora Cagra.4190s0013 N
Cagra.4082s0018 Capsella grandiflora Cagra.4082s0018 N
Carubv10001432m.g Capsella rubella Carubv10001432m.g N
evm.TU.supercontig_11.127 Carica papaya evm.TU.supercontig_11.127 N
Ca_10636 Cicer arietinum Ca_10636 N
Ca_22200 Cicer arietinum Ca_22200 N
Ciclev10012342m.g Citrus clementina Ciclev10012342m.g N
orange1.1g022743m.g Citrus sinensis orange1.1g022743m.g N
Thhalv10015815m.g Eutrema salsugineum Thhalv10015815m.g N
gene13452-v1.0-hybrid Fragaria vesca gene13452-v1.0-hybrid N
GLYMA01G35370 Glycine max GLYMA01G35370 N
Gorai.012G114700 Gossypium raimondii Gorai.012G114700 N
Gorai.006G183000 Gossypium raimondii Gorai.006G183000 N
Lus10004806.g Linum usitatissimum Lus10004806.g N
chr2.CM0803.380.nc Lotus japonicus chr2.CM0803.380.nc N
MDP0000269977 Malus domestica MDP0000269977 N
MDP0000296708 Malus domestica MDP0000296708 N
cassava39493.m1 Manihot esculenta cassava39493.m1 N
MTR_5g026540 Medicago truncatula MTR_5g026540 N
MTR_4g015680 Medicago truncatula MTR_4g015680 N
POPTR_0003s10360 Populus trichocarpa POPTR_0003s10360 N
POPTR_0001s01210 Populus trichocarpa POPTR_0001s01210 N
SapurV1A.1378s0050 Salix purpurea SapurV1A.1378s0050 N
SapurV1A.1496s0030 Salix purpurea SapurV1A.1496s0030 N
Solyc09g005560.2 Solanum lycopersicum Solyc09g005560.2 N
PGSC0003DMG400030246 Solanum tuberosum PGSC0003DMG400030246 N
TCM_021682 Theobroma cacao TCM_021682 N