Ciclev10001893m.g (Citrus clementina)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Ciclev10001893m.g T071616_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DPBF3
M01133_2.00 		Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD		 PBM
Lambert et al.(2019)
pTH11531 		0.819 0.900
DPBF3
M01058_2.00 		Arabidopsis thaliana
HBACGTGKM
KMCACGTVD		 PBM
Sullivan et al.(2014)
pTH7219 		0.819 0.900
DPBF3
M01059_2.00 		Arabidopsis thaliana
NNMCACGTVN
NBACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7547 		0.819 0.900
DPBF3
M06777_2.00 		Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA		 Dap-seq
OMalley et al.(2016)
AREB3_colamp_a 		0.819 0.900
DPBF3
M06778_2.00 		Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA		 Dap-seq
OMalley et al.(2016)
AREB3_col_v31 		0.819 0.900
PK24978.1
M01162_2.00 		Cannabis sativa
NNNCACGTRTHNNNN
NNNNDAYACGTGNNN		 PBM
Lambert et al.(2019)
pTH10153 		0.787 0.720
ABF2
M01771_2.00 		Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN		 PBM
Weirauch et al.(2014)
pTH8103 		0.787 0.680
ABF2
M06755_2.00 		Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN		 Dap-seq
OMalley et al.(2016)
ABF2_col_v3a 		0.787 0.680
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10001893m bZIP 244 293

Links

Other bZIP family TFs
Other Citrus clementina TFs

298 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00010p00030830 Amborella trichopoda AMTR_s00010p00030830 I 0.000
AMTR_s00095p00059370 Amborella trichopoda AMTR_s00095p00059370 I 0.000
BRADI2G23890 Brachypodium distachyon BRADI2G23890 N 0.000
BRADI2G55567 Brachypodium distachyon BRADI2G55567 I 0.000
GLYMA02G30220 Glycine max GLYMA02G30220 I 0.000
GLYMA10G11985 Glycine max GLYMA10G11985 I 0.000
GLYMA12G30990 Glycine max GLYMA12G30990 I 0.000
MLOC_79223 Hordeum vulgare MLOC_79223 N 0.000
MLOC_65998 Hordeum vulgare MLOC_65998 I 0.000
LPERR01G32640 Leersia perrieri LPERR01G32640 I 0.000
GSMUA_Achr10G10300_001 Musa acuminata GSMUA_Achr10G10300_001 N 0.000
GSMUA_Achr11G26170_001 Musa acuminata GSMUA_Achr11G26170_001 N 0.000
OBART01G38000 Oryza barthii OBART01G38000 I 0.000
OB01G46780 Oryza brachyantha OB01G46780 I 0.000
ORGLA01G0318100 Oryza glaberrima ORGLA01G0318100 I 0.000
OGLUM01G42170 Oryza glumaepatula OGLUM01G42170 I 0.000
BGIOSGA000451 Oryza indica BGIOSGA000451 I 0.000
OLONG_014543 Oryza longistaminata OLONG_014543 I 0.000
OMERI01G34960 Oryza meridionalis OMERI01G34960 I 0.000
ONIVA04G25750 Oryza nivara ONIVA04G25750 I 0.000
OPUNC01G36830 Oryza punctata OPUNC01G36830 I 0.000
ORUFI01G41330 Oryza rufipogon ORUFI01G41330 I 0.000
LG2 Oryza sativa OS01G0859500 I 0.000
Pavir.Ea03760 Panicum virgatum Pavir.Ea03760 N 0.000
Si000955m.g Setaria italica Si000955m.g N 0.000
Sb03g040530 Sorghum bicolor Sb03g040530 N 0.000
Traes_1BL_B03720C3B Triticum aestivum Traes_1BL_B03720C3B N 0.000
Traes_1DL_AFDF3B024 Triticum aestivum Traes_1DL_AFDF3B024 N 0.000
Traes_3AL_C5E13251D Triticum aestivum Traes_3AL_C5E13251D I 0.000
TRAES3BF099600030CFD_g Triticum aestivum TRAES3BF099600030CFD_g I 0.000
Traes_3DL_4A4D552B2 Triticum aestivum Traes_3DL_4A4D552B2 I 0.000
AC232238.2_FG004 Zea mays AC232238.2_FG004 N 0.000
GRMZM2G060216 Zea mays GRMZM2G060216 N 0.000