VDBG_05992 (Verticillium albo atrum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 VDBG_05992 T078395_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU09333
M01892_2.00 		Neurospora crassa
NNNNGCCTDN
NHAGGCNNNN		 PBM
Weirauch et al.(2014)
pTH8940 		0.779 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VDBG_05992T0 C2H2 ZF 426 450

Links

Other C2H2 ZF family TFs
Other Verticillium albo atrum TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g177030 Brassica oleracea Bo9g177030 N
Bra009123 Brassica rapa Bra009123 N
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Ca_13412 Cicer arietinum Ca_13412 N
Ciclev10030684m.g Citrus clementina Ciclev10030684m.g N
Eucgr.J00206 Eucalyptus grandis Eucgr.J00206 N
GLYMA18G03080 Glycine max GLYMA18G03080 N
GLYMA11G35320 Glycine max GLYMA11G35320 N
Gorai.010G197800 Gossypium raimondii Gorai.010G197800 N
LPERR01G03530 Leersia perrieri LPERR01G03530 N
MTR_3g070780 Medicago truncatula MTR_3g070780 N
OBART01G03880 Oryza barthii OBART01G03880 N
OB01G13760 Oryza brachyantha OB01G13760 N
ORGLA01G0034200 Oryza glaberrima ORGLA01G0034200 N
OGLUM01G04180 Oryza glumaepatula OGLUM01G04180 N
BGIOSGA002351 Oryza indica BGIOSGA002351 N
OLONG_021562 Oryza longistaminata OLONG_021562 N
OMERI01G03770 Oryza meridionalis OMERI01G03770 N
ONIVA01G04320 Oryza nivara ONIVA01G04320 N
OPUNC01G03540 Oryza punctata OPUNC01G03540 N
ORUFI01G03990 Oryza rufipogon ORUFI01G03990 N
OS01G0158900 Oryza sativa OS01G0158900 N
POPTR_0010s19600 Populus trichocarpa POPTR_0010s19600 N
28162.m000128 Ricinus communis 28162.m000128 N
SapurV1A.0061s0270 Salix purpurea SapurV1A.0061s0270 N
Si000223m.g Setaria italica Si000223m.g N
ATNFXL2 Vitis vinifera VIT_13s0067g00920 N