CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ACEP13085
(
Atta cephalotes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ACEP13085
T079339_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
esg
M06050_2.00
Drosophila melanogaster
CACCTGH
DCAGGTG
B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981
0.780
0.858
wor
M03664_2.00
Drosophila melanogaster
GYRACAGGTGYAH
DTRCACCTGTYRC
SELEX
Nitta et al.(2015)
wor_1
0.765
0.832
wor
M03665_2.00
Drosophila melanogaster
DTRCACCTGTYGY
RCRACAGGTGYAH
SELEX
Nitta et al.(2015)
wor_2
0.765
0.832
wor
M06051_2.00
Drosophila melanogaster
CACCTGY
RCAGGTG
B1H
Zhu et al.(2011)
wor_SANGER_2.5_FBgn0001983
0.765
0.832
wor
M06052_2.00
Drosophila melanogaster
VCACCTGY
RCAGGTGB
B1H
Zhu et al.(2011)
wor_SOLEXA_2.5_FBgn0001983
0.765
0.832
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ACEP13085-PA
C2H2 ZF
372
394
YPCKNCTKSYSTFSGLSKHQQFH
ACEP13085-PA
C2H2 ZF
406
428
FSCKFCSKVYVSLGALKMHIRTH
ACEP13085-PA
C2H2 ZF
432
454
CKCHTCGKAFSRPWLLQGHIRTH
ACEP13085-PA
C2H2 ZF
460
482
FRCQHCNRAFADRSNLRAHLQTH
ACEP13085-PA
C2H2 ZF
488
508
YSCDRCSKTFSRMSLLTKHQD
Links
Other
C2H2 ZF
family TFs
Other
Atta cephalotes
TFs
50 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.supercontig_17.185
Carica papaya
evm.TU.supercontig_17.185
N
Ca_15323
Cicer arietinum
Ca_15323
N
Ciclev10021399m.g
Citrus clementina
Ciclev10021399m.g
N
gene09561-v1.0-hybrid
Fragaria vesca
gene09561-v1.0-hybrid
N
Gorai.007G034800
Gossypium raimondii
Gorai.007G034800
N
Gorai.003G070700
Gossypium raimondii
Gorai.003G070700
N
LjSGA_089351.1
Lotus japonicus
LjSGA_089351.1
N
MDP0000216231
Malus domestica
MDP0000216231
N
MDP0000153290
Malus domestica
MDP0000153290
N
cassava35156.m1
Manihot esculenta
cassava35156.m1
N
cassava19740.m1
Manihot esculenta
cassava19740.m1
N
MTR_4g107450
Medicago truncatula
MTR_4g107450
N
GSMUA_Achr5G15570_001
Musa acuminata
GSMUA_Achr5G15570_001
N
POPTR_0015s07780
Populus trichocarpa
POPTR_0015s07780
N
Pm024623
Prunus mume
Pm024623
N
30147.m014053
Ricinus communis
30147.m014053
N
SapurV1A.0161s0030
Salix purpurea
SapurV1A.0161s0030
N
Solyc03g113360.2
Solanum lycopersicum
Solyc03g113360.2
N
PGSC0003DMG400013182
Solanum tuberosum
PGSC0003DMG400013182
N
TCM_030184
Theobroma cacao
TCM_030184
N