AMTR_s00017p00086440 (Amborella trichopoda)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AMTR_s00017p00086440 T080671_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.774 0.929
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.774 0.929
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN08554 C2H2 ZF 390 412
ERN08554 C2H2 ZF 413 438

Links

Other C2H2 ZF family TFs
Other Amborella trichopoda TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_04088 Aegilops tauschii F775_04088 I 0.797
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I 0.827
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.774
STOP1 Arabidopsis thaliana AT1G34370 D 0.774
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.774
BRADI2G56320 Brachypodium distachyon BRADI2G56320 I 0.797
Bo8g027000 Brassica oleracea Bo8g027000 I 0.774
Bra040971 Brassica rapa Bra040971 I 0.797
PK23301.1 Cannabis sativa PK23301.1 I 0.774
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.774
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.774
Ca_04300 Cicer arietinum Ca_04300 I 0.774
Cla016623 Citrullus lanatus Cla016623 I 0.767
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.767
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.764
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.774
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.774
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.774
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.774
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.774
MLOC_10987 Hordeum vulgare MLOC_10987 I 0.797
LPERR01G33350 Leersia perrieri LPERR01G33350 I 0.797
LPERR03G34390 Leersia perrieri LPERR03G34390 I 0.769
Lus10009435.g Linum usitatissimum Lus10009435.g I 0.774
MDP0000807856 Malus domestica MDP0000807856 I 0.774
MDP0000551046 Malus domestica MDP0000551046 I 0.774
MDP0000453148 Malus domestica MDP0000453148 I 0.788
MDP0000199559 Malus domestica MDP0000199559 I 0.774
MDP0000141403 Malus domestica MDP0000141403 I 0.774
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.774
mgf000060m Mimulus guttatus mgf000060m I 0.774
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.774
GSMUA_Achr10G15970_001 Musa acuminata GSMUA_Achr10G15970_001 I 0.792
OBART01G38810 Oryza barthii OBART01G38810 I 0.797
OB03G47410 Oryza brachyantha OB03G47410 I 0.769
OB01G47470 Oryza brachyantha OB01G47470 I 0.797
ORGLA01G0326400 Oryza glaberrima ORGLA01G0326400 I 0.797
BGIOSGA004888 Oryza indica BGIOSGA004888 I 0.797
OLONG_020555 Oryza longistaminata OLONG_020555 I 0.797
ONIVA01G43630 Oryza nivara ONIVA01G43630 I 0.797
OPUNC01G37530 Oryza punctata OPUNC01G37530 I 0.797
ORUFI01G42150 Oryza rufipogon ORUFI01G42150 I 0.797
OS01G0871200 Oryza sativa OS01G0871200 I 0.797
Pavir.Ia00191 Panicum virgatum Pavir.Ia00191 I 0.769
Pavir.J01834 Panicum virgatum Pavir.J01834 I 0.769
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.774
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.774
Pavir.J14096 Panicum virgatum Pavir.J14096 I 0.797
PDK_20s1338731g001 Phoenix dactylifera PDK_20s1338731g001 I 0.774
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I 0.774
Pm022201 Prunus mume Pm022201 I 0.774
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.774
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.774
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.774
SELMODRAFT_48272 Selaginella moellendorffii SELMODRAFT_48272 I 0.768
SELMODRAFT_58350 Selaginella moellendorffii SELMODRAFT_58350 I 0.768
Si001053m.g Setaria italica Si001053m.g I 0.797
Si036555m.g Setaria italica Si036555m.g I 0.769
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.764
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.764
Sb03g041170 Sorghum bicolor Sb03g041170 I 0.797
Sb01g001950 Sorghum bicolor Sb01g001950 I 0.769
TCM_036719 Theobroma cacao TCM_036719 I 0.764
Traes_3AL_00FAACD5D Triticum aestivum Traes_3AL_00FAACD5D I 0.797
TRAES3BF044200110CFD_g Triticum aestivum TRAES3BF044200110CFD_g I 0.797
Traes_3DL_0284E68CC1 Triticum aestivum Traes_3DL_0284E68CC1 I 0.797
TRIUR3_13796 Triticum urartu TRIUR3_13796 I 0.797
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.774
GRMZM2G129428 Zea mays GRMZM2G129428 I 0.797
GRMZM2G075956 Zea mays GRMZM2G075956 I 0.797