ENSGACG00000004834 (Gasterosteus aculeatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGACG00000004834 T095583_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.795 0.957
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.795 0.957
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.795 0.957
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.795 0.957
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.795 0.957
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.795 0.957
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.779 0.922
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.779 0.922
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.779 0.922
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.779 0.922
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.779 0.922
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.779 0.922
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.779 0.922
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.779 0.922
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.779 0.922
Gli1
M01023_2.00 		Mus musculus
NGACCACCHN
NDGGTGGTCN		 PBM
Peterson et al.(2012)
Gli1 		0.766 0.861
GLI1
M02643_2.00 		Homo sapiens
GACCACCCAMG
CKTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI1 		0.766 0.861
Gli1
M08976_2.00 		Mus musculus
RGRCCACCCASV
BSTGGGTGGYCY		 Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C 		0.766 0.861
GLI1
M10176_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q2 		0.766 0.861
GLI1
M10177_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3_01 		0.766 0.861
GLI1
M10178_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3 		0.766 0.861
GLI1
M10179_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI_Q6 		0.766 0.861
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000006391 C2H2 ZF 489 514
ENSGACP00000006391 C2H2 ZF 522 549
ENSGACP00000006391 C2H2 ZF 555 579
ENSGACP00000006391 C2H2 ZF 585 610
ENSGACP00000006391 C2H2 ZF 616 641

Links

Other C2H2 ZF family TFs
Other Gasterosteus aculeatus TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00064p00208400 Amborella trichopoda AMTR_s00064p00208400 I 0.000
Aquca_020_00438 Aquilegia coerulea Aquca_020_00438 I 0.000
Al_scaffold_0008_2143 Arabidopsis lyrata Al_scaffold_0008_2143 I 0.000
AT5G56960 Arabidopsis thaliana AT5G56960 I 0.000
Bostr.26833s0565 Boechera stricta Bostr.26833s0565 I 0.000
Bo2g032920 Brassica oleracea Bo2g032920 I 0.000
Bra035639 Brassica rapa Bra035639 I 0.000
PK15505.1 Cannabis sativa PK15505.1 D 0.000
Cagra.1569s0004 Capsella grandiflora Cagra.1569s0004 I 0.000
Carubv10026331m.g Capsella rubella Carubv10026331m.g I 0.000
Cla017100 Citrullus lanatus Cla017100 I 0.000
Ciclev10007937m.g Citrus clementina Ciclev10007937m.g I 0.000
orange1.1g008967m.g Citrus sinensis orange1.1g008967m.g I 0.000
Cucsa.117060 Cucumis sativus Cucsa.117060 I 0.000
Eucgr.C03476 Eucalyptus grandis Eucgr.C03476 I 0.000
Thhalv10013360m.g Eutrema salsugineum Thhalv10013360m.g I 0.000
gene12658-v1.0-hybrid Fragaria vesca gene12658-v1.0-hybrid I 0.000
GLYMA15G18580 Glycine max GLYMA15G18580 I 0.000
GLYMA09G07391 Glycine max GLYMA09G07391 I 0.000
Gorai.001G012400 Gossypium raimondii Gorai.001G012400 I 0.000
Gorai.009G031900 Gossypium raimondii Gorai.009G031900 I 0.000
LPERR05G05410 Leersia perrieri LPERR05G05410 I 0.000
LjT02N03.60.nd Lotus japonicus LjT02N03.60.nd I 0.000
MDP0000782908 Malus domestica MDP0000782908 I 0.000
MDP0000252899 Malus domestica MDP0000252899 I 0.000
cassava25701.m1 Manihot esculenta cassava25701.m1 I 0.000
cassava46879.m1 Manihot esculenta cassava46879.m1 I 0.000
mgf018190m Mimulus guttatus mgf018190m I 0.000
GSMUA_Achr6G00900_001 Musa acuminata GSMUA_Achr6G00900_001 I 0.000
OBART05G06380 Oryza barthii OBART05G06380 I 0.000
OB05G15870 Oryza brachyantha OB05G15870 I 0.000
ORGLA05G0058200 Oryza glaberrima ORGLA05G0058200 I 0.000
OGLUM05G06690 Oryza glumaepatula OGLUM05G06690 I 0.000
BGIOSGA033976 Oryza indica BGIOSGA033976 I 0.000
ONIVA05G07120 Oryza nivara ONIVA05G07120 I 0.000
OPUNC05G05910 Oryza punctata OPUNC05G05910 I 0.000
ORUFI05G06870 Oryza rufipogon ORUFI05G06870 I 0.000
OS05G0199800 Oryza sativa OS05G0199800 I 0.000
Pavir.Ca00825 Panicum virgatum Pavir.Ca00825 I 0.000
Pavir.J01638 Panicum virgatum Pavir.J01638 I 0.000
PDK_20s1427741g002 Phoenix dactylifera PDK_20s1427741g002 I 0.000
POPTR_0006s15310 Populus trichocarpa POPTR_0006s15310 I 0.000
Pm027191 Prunus mume Pm027191 I 0.000
PRUPE_ppa020972mg Prunus persica PRUPE_ppa020972mg I 0.000
29912.m005337 Ricinus communis 29912.m005337 I 0.000
SapurV1A.0108s0270 Salix purpurea SapurV1A.0108s0270 I 0.000
Si024546m.g Setaria italica Si024546m.g I 0.000
Solyc07g039570.2 Solanum lycopersicum Solyc07g039570.2 I 0.000
PGSC0003DMG400022043 Solanum tuberosum PGSC0003DMG400022043 I 0.000
PGSC0003DMG400000335 Solanum tuberosum PGSC0003DMG400000335 I 0.000
TCM_037645 Theobroma cacao TCM_037645 I 0.000
VIT_11s0016g02070 Vitis vinifera VIT_11s0016g02070 I 0.000
GRMZM2G175480 Zea mays GRMZM2G175480 N 0.000