gli2b (Takifugu rubripes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTRUG00000007692 T112322_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.797 0.965
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.797 0.965
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.797 0.965
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.797 0.965
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.797 0.965
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.797 0.965
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.779 0.922
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.779 0.922
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.779 0.922
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.779 0.922
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.779 0.922
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.779 0.922
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.779 0.922
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.779 0.922
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.779 0.922
Gli1
M01023_2.00 		Mus musculus
NGACCACCHN
NDGGTGGTCN		 PBM
Peterson et al.(2012)
Gli1 		0.766 0.861
GLI1
M02643_2.00 		Homo sapiens
GACCACCCAMG
CKTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI1 		0.766 0.861
Gli1
M08976_2.00 		Mus musculus
RGRCCACCCASV
BSTGGGTGGYCY		 Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C 		0.766 0.861
GLI1
M10176_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q2 		0.766 0.861
GLI1
M10177_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3_01 		0.766 0.861
GLI1
M10178_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3 		0.766 0.861
GLI1
M10179_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI_Q6 		0.766 0.861
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000019088 C2H2 ZF 498 523
ENSTRUP00000019088 C2H2 ZF 531 558
ENSTRUP00000019088 C2H2 ZF 564 588
ENSTRUP00000019088 C2H2 ZF 594 619
ENSTRUP00000019088 C2H2 ZF 625 650
ENSTRUP00000019089 C2H2 ZF 453 478
ENSTRUP00000019089 C2H2 ZF 486 513
ENSTRUP00000019089 C2H2 ZF 519 543
ENSTRUP00000019089 C2H2 ZF 549 574
ENSTRUP00000019089 C2H2 ZF 580 605
ENSTRUP00000019090 C2H2 ZF 452 477
ENSTRUP00000019090 C2H2 ZF 485 512
ENSTRUP00000019090 C2H2 ZF 518 542
ENSTRUP00000019090 C2H2 ZF 548 573
ENSTRUP00000019090 C2H2 ZF 579 604
ENSTRUP00000019091 C2H2 ZF 379 404
ENSTRUP00000019091 C2H2 ZF 412 439
ENSTRUP00000019091 C2H2 ZF 445 469
ENSTRUP00000019091 C2H2 ZF 475 500
ENSTRUP00000019091 C2H2 ZF 506 531
ENSTRUP00000019092 C2H2 ZF 375 400
ENSTRUP00000019092 C2H2 ZF 408 435
ENSTRUP00000019092 C2H2 ZF 441 465
ENSTRUP00000019092 C2H2 ZF 471 496
ENSTRUP00000019092 C2H2 ZF 502 527
ENSTRUP00000019093 C2H2 ZF 307 332
ENSTRUP00000019093 C2H2 ZF 340 367
ENSTRUP00000019093 C2H2 ZF 373 397
ENSTRUP00000019093 C2H2 ZF 403 428
ENSTRUP00000019093 C2H2 ZF 434 459
ENSTRUP00000019094 C2H2 ZF 307 332
ENSTRUP00000019094 C2H2 ZF 340 367
ENSTRUP00000019094 C2H2 ZF 373 397
ENSTRUP00000019094 C2H2 ZF 403 428
ENSTRUP00000019094 C2H2 ZF 434 459

Links

Other C2H2 ZF family TFs
Other Takifugu rubripes TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_05299 Aegilops tauschii F775_05299 N 0.000
AMTR_s00031p00017860 Amborella trichopoda AMTR_s00031p00017860 I 0.000
Aquca_004_00127 Aquilegia coerulea Aquca_004_00127 I 0.000
Aquca_004_00791 Aquilegia coerulea Aquca_004_00791 I 0.000
Aquca_009_00172 Aquilegia coerulea Aquca_009_00172 I 0.000
Aquca_009_00424 Aquilegia coerulea Aquca_009_00424 I 0.000
Aquca_072_00138 Aquilegia coerulea Aquca_072_00138 I 0.000
TGA6 Arabidopsis lyrata fgenesh2_kg.3__1288__AT3G12250.4 I 0.000
OBF5 Arabidopsis lyrata fgenesh2_kg.6__648__AT5G06960.1 I 0.000
TGA6 Arabidopsis thaliana AT3G12250 D 0.000
TGA2 Arabidopsis thaliana AT5G06950 D 0.000
TGA5 Arabidopsis thaliana AT5G06960 D 0.000
Bostr.13129s0278 Boechera stricta Bostr.13129s0278 I 0.000
Bostr.13129s0279 Boechera stricta Bostr.13129s0279 I 0.000
Bostr.3640s0002 Boechera stricta Bostr.3640s0002 I 0.000
BRADI2G10830 Brachypodium distachyon BRADI2G10830 I 0.000
Bo1g139470 Brassica oleracea Bo1g139470 I 0.000
Bo2g007460 Brassica oleracea Bo2g007460 I 0.000
Bo3g064830 Brassica oleracea Bo3g064830 I 0.000
Bo5g133550 Brassica oleracea Bo5g133550 I 0.000
Bo9g175710 Brassica oleracea Bo9g175710 I 0.000
Bra001443 Brassica rapa Bra001443 I 0.000
Bra009241 Brassica rapa Bra009241 I 0.000
Bra028713 Brassica rapa Bra028713 I 0.000
Bra034767 Brassica rapa Bra034767 I 0.000
Bra038705 Brassica rapa Bra038705 I 0.000
PK07387.1 Cannabis sativa PK07387.1 I 0.000
PK09021.1 Cannabis sativa PK09021.1 D 0.000
PK13754.1 Cannabis sativa PK13754.1 I 0.000
PK21698.1 Cannabis sativa PK21698.1 I 0.000
Cagra.0430s0055 Capsella grandiflora Cagra.0430s0055 I 0.000
Cagra.16209s0003 Capsella grandiflora Cagra.16209s0003 I 0.000
Cagra.16209s0004 Capsella grandiflora Cagra.16209s0004 I 0.000
Carubv10001409m.g Capsella rubella Carubv10001409m.g I 0.000
Carubv10001413m.g Capsella rubella Carubv10001413m.g I 0.000
evm.TU.supercontig_1.202 Carica papaya evm.TU.supercontig_1.202 I 0.000
evm.TU.supercontig_32.14 Carica papaya evm.TU.supercontig_32.14 I 0.000
evm.TU.supercontig_5.165 Carica papaya evm.TU.supercontig_5.165 I 0.000
evm.TU.supercontig_847.1 Carica papaya evm.TU.supercontig_847.1 I 0.000
evm.TU.supercontig_85.93 Carica papaya evm.TU.supercontig_85.93 I 0.000
Ca_07057 Cicer arietinum Ca_07057 I 0.000
Ca_07170 Cicer arietinum Ca_07170 I 0.000
Ca_10901 Cicer arietinum Ca_10901 I 0.000
Ca_16486 Cicer arietinum Ca_16486 N 0.000
Ca_17971 Cicer arietinum Ca_17971 I 0.000
Cla002918 Citrullus lanatus Cla002918 I 0.000
Cla008794 Citrullus lanatus Cla008794 I 0.000
Cla010092 Citrullus lanatus Cla010092 I 0.000
Cla017796 Citrullus lanatus Cla017796 I 0.000
Cla022393 Citrullus lanatus Cla022393 I 0.000
Ciclev10001081m.g Citrus clementina Ciclev10001081m.g I 0.000
Ciclev10005080m.g Citrus clementina Ciclev10005080m.g I 0.000
Ciclev10031361m.g Citrus clementina Ciclev10031361m.g I 0.000
orange1.1g015258m.g Citrus sinensis orange1.1g015258m.g I 0.000
orange1.1g038233m.g Citrus sinensis orange1.1g038233m.g I 0.000
orange1.1g045786m.g Citrus sinensis orange1.1g045786m.g I 0.000
Cucsa.005120 Cucumis sativus Cucsa.005120 I 0.000
Cucsa.199800 Cucumis sativus Cucsa.199800 I 0.000
Cucsa.242870 Cucumis sativus Cucsa.242870 I 0.000
Cucsa.307820 Cucumis sativus Cucsa.307820 I 0.000
Cucsa.337740 Cucumis sativus Cucsa.337740 I 0.000
Cucsa.365420 Cucumis sativus Cucsa.365420 N 0.000
Cucsa.385130 Cucumis sativus Cucsa.385130 N 0.000
Eucgr.A02240 Eucalyptus grandis Eucgr.A02240 I 0.000
Eucgr.B03855 Eucalyptus grandis Eucgr.B03855 I 0.000
Eucgr.G03217 Eucalyptus grandis Eucgr.G03217 I 0.000
Eucgr.J00491 Eucalyptus grandis Eucgr.J00491 I 0.000
Eucgr.K01643 Eucalyptus grandis Eucgr.K01643 I 0.000
Thhalv10014082m.g Eutrema salsugineum Thhalv10014082m.g I 0.000
Thhalv10021187m.g Eutrema salsugineum Thhalv10021187m.g I 0.000
gene00517-v1.0-hybrid Fragaria vesca gene00517-v1.0-hybrid I 0.000
gene21797-v1.0-hybrid Fragaria vesca gene21797-v1.0-hybrid I 0.000
gene21882-v1.0-hybrid Fragaria vesca gene21882-v1.0-hybrid I 0.000
GLYMA03G28320 Glycine max GLYMA03G28320 I 0.000
GLYMA11G19026 Glycine max GLYMA11G19026 I 0.000
GLYMA12G09430 Glycine max GLYMA12G09430 I 0.000
GLYMA13G26280 Glycine max GLYMA13G26280 I 0.000
GLYMA15G37220 Glycine max GLYMA15G37220 I 0.000
GLYMA19G31050 Glycine max GLYMA19G31050 I 0.000
GLYMA20G39050 Glycine max GLYMA20G39050 I 0.000
Gorai.001G122100 Gossypium raimondii Gorai.001G122100 I 0.000
Gorai.002G228200 Gossypium raimondii Gorai.002G228200 I 0.000
Gorai.006G111800 Gossypium raimondii Gorai.006G111800 I 0.000
Gorai.006G141000 Gossypium raimondii Gorai.006G141000 I 0.000
Gorai.007G352600 Gossypium raimondii Gorai.007G352600 I 0.000
Gorai.008G185000 Gossypium raimondii Gorai.008G185000 I 0.000
Gorai.009G086200 Gossypium raimondii Gorai.009G086200 N 0.000
Gorai.011G217200 Gossypium raimondii Gorai.011G217200 I 0.000
Gorai.013G001700 Gossypium raimondii Gorai.013G001700 I 0.000
Gorai.013G081100 Gossypium raimondii Gorai.013G081100 I 0.000
MLOC_14596 Hordeum vulgare MLOC_14596 I 0.000
MLOC_17690 Hordeum vulgare MLOC_17690 N 0.000
LPERR01G10700 Leersia perrieri LPERR01G10700 I 0.000
Lus10008658.g Linum usitatissimum Lus10008658.g I 0.000
Lus10024140.g Linum usitatissimum Lus10024140.g I 0.000
Lus10026166.g Linum usitatissimum Lus10026166.g I 0.000
Lus10034296.g Linum usitatissimum Lus10034296.g I 0.000
chr1.CM0009.80.nd Lotus japonicus chr1.CM0009.80.nd I 0.000
MDP0000262210 Malus domestica MDP0000262210 I 0.000
MDP0000300532 Malus domestica MDP0000300532 I 0.000
MDP0000307943 Malus domestica MDP0000307943 I 0.000
MDP0000320322 Malus domestica MDP0000320322 I 0.000
MDP0000320524 Malus domestica MDP0000320524 I 0.000
MDP0000536881 Malus domestica MDP0000536881 I 0.000
cassava13378.valid.m1 Manihot esculenta cassava13378.valid.m1 I 0.000
cassava13449.valid.m1 Manihot esculenta cassava13449.valid.m1 N 0.000
cassava1426.valid.m1 Manihot esculenta cassava1426.valid.m1 I 0.000
cassava1427.valid.m1 Manihot esculenta cassava1427.valid.m1 I 0.000
cassava22236.valid.m1 Manihot esculenta cassava22236.valid.m1 I 0.000
cassava22237.valid.m1 Manihot esculenta cassava22237.valid.m1 I 0.000
cassava6928.valid.m1 Manihot esculenta cassava6928.valid.m1 I 0.000
MTR_2g086420 Medicago truncatula MTR_2g086420 I 0.000
MTR_4g053250 Medicago truncatula MTR_4g053250 I 0.000
MTR_7g089800 Medicago truncatula MTR_7g089800 I 0.000
MTR_8g040120 Medicago truncatula MTR_8g040120 I 0.000
mgf001395m Mimulus guttatus mgf001395m I 0.000
mgf005858m Mimulus guttatus mgf005858m I 0.000
mgf016030m Mimulus guttatus mgf016030m N 0.000
mgf025345m Mimulus guttatus mgf025345m I 0.000
GSMUA_Achr10G00340_001 Musa acuminata GSMUA_Achr10G00340_001 I 0.000
GSMUA_Achr10G10300_001 Musa acuminata GSMUA_Achr10G10300_001 N 0.000
GSMUA_Achr11G25140_001 Musa acuminata GSMUA_Achr11G25140_001 I 0.000
GSMUA_Achr11G26170_001 Musa acuminata GSMUA_Achr11G26170_001 N 0.000
GSMUA_Achr2G06770_001 Musa acuminata GSMUA_Achr2G06770_001 I 0.000
GSMUA_Achr3G11150_001 Musa acuminata GSMUA_Achr3G11150_001 I 0.000
GSMUA_Achr3G25020_001 Musa acuminata GSMUA_Achr3G25020_001 I 0.000
GSMUA_Achr8G05800_001 Musa acuminata GSMUA_Achr8G05800_001 I 0.000
GSMUA_Achr8G21670_001 Musa acuminata GSMUA_Achr8G21670_001 I 0.000
OBART01G11380 Oryza barthii OBART01G11380 I 0.000
OBART01G34430 Oryza barthii OBART01G34430 I 0.000
OB01G21470 Oryza brachyantha OB01G21470 I 0.000
OB01G43330 Oryza brachyantha OB01G43330 I 0.000
OGLUM01G20660 Oryza glumaepatula OGLUM01G20660 I 0.000
BGIOSGA000624 Oryza indica BGIOSGA000624 I 0.000
BGIOSGA003265 Oryza indica BGIOSGA003265 I 0.000
OLONG_020675 Oryza longistaminata OLONG_020675 I 0.000
OMERI01G31730 Oryza meridionalis OMERI01G31730 I 0.000
ONIVA01G13810 Oryza nivara ONIVA01G13810 I 0.000
ONIVA01G39320 Oryza nivara ONIVA01G39320 I 0.000
OPUNC01G11270 Oryza punctata OPUNC01G11270 I 0.000
OPUNC01G33450 Oryza punctata OPUNC01G33450 I 0.000
ORUFI01G12420 Oryza rufipogon ORUFI01G12420 I 0.000
ORUFI01G37800 Oryza rufipogon ORUFI01G37800 I 0.000
TGA2.3 Oryza sativa OS01G0279900 I 0.000
OS01G0808100 Oryza sativa OS01G0808100 I 0.000
Pavir.Eb01160 Panicum virgatum Pavir.Eb01160 I 0.000
Pavir.Eb03507 Panicum virgatum Pavir.Eb03507 I 0.000
PDK_20s1462851g003 Phoenix dactylifera PDK_20s1462851g003 I 0.000
POPTR_0001s06700 Populus trichocarpa POPTR_0001s06700 I 0.000
POPTR_0004s21360 Populus trichocarpa POPTR_0004s21360 I 0.000
POPTR_0006s03720 Populus trichocarpa POPTR_0006s03720 I 0.000
PAN Populus trichocarpa POPTR_0008s11710 I 0.000
POPTR_0009s16590 Populus trichocarpa POPTR_0009s16590 I 0.000
POPTR_0016s03590 Populus trichocarpa POPTR_0016s03590 I 0.000
Pm001317 Prunus mume Pm001317 I 0.000
Pm016643 Prunus mume Pm016643 I 0.000
Pm025995 Prunus mume Pm025995 I 0.000
Pm028917 Prunus mume Pm028917 I 0.000
PRUPE_ppa003825mg Prunus persica PRUPE_ppa003825mg I 0.000
PRUPE_ppa004537mg Prunus persica PRUPE_ppa004537mg I 0.000
PRUPE_ppa005279mg Prunus persica PRUPE_ppa005279mg I 0.000
29216.m000249 Ricinus communis 29216.m000249 I 0.000
30055.m001550 Ricinus communis 30055.m001550 I 0.000
30131.m007163 Ricinus communis 30131.m007163 I 0.000
SapurV1A.0018s0400 Salix purpurea SapurV1A.0018s0400 I 0.000
SapurV1A.0079s0330 Salix purpurea SapurV1A.0079s0330 I 0.000
SapurV1A.0125s0260 Salix purpurea SapurV1A.0125s0260 I 0.000
SapurV1A.0189s0240 Salix purpurea SapurV1A.0189s0240 I 0.000
SapurV1A.0196s0260 Salix purpurea SapurV1A.0196s0260 I 0.000
SapurV1A.0374s0050 Salix purpurea SapurV1A.0374s0050 I 0.000
SapurV1A.1761s0020 Salix purpurea SapurV1A.1761s0020 I 0.000
Si001292m.g Setaria italica Si001292m.g I 0.000
Si002195m.g Setaria italica Si002195m.g I 0.000
Solyc10g080770.1 Solanum lycopersicum Solyc10g080770.1 I 0.000
Solyc11g064950.1 Solanum lycopersicum Solyc11g064950.1 I 0.000
PGSC0003DMG400009449 Solanum tuberosum PGSC0003DMG400009449 I 0.000
PGSC0003DMG402023696 Solanum tuberosum PGSC0003DMG402023696 I 0.000
Sb03g006790 Sorghum bicolor Sb03g006790 I 0.000
Sb03g037560 Sorghum bicolor Sb03g037560 I 0.000
Sb04g006500 Sorghum bicolor Sb04g006500 I 0.000
TCM_011845 Theobroma cacao TCM_011845 I 0.000
TCM_023491 Theobroma cacao TCM_023491 I 0.000
TCM_023492 Theobroma cacao TCM_023492 I 0.000
TCM_024862 Theobroma cacao TCM_024862 I 0.000
TCM_041421 Theobroma cacao TCM_041421 I 0.000
HBP1B_WHEAT Triticum aestivum HBP1B_WHEAT D 0.000
TRAES3BF003000030CFD_g Triticum aestivum TRAES3BF003000030CFD_g I 0.000
Traes_4AL_5E7F93445 Triticum aestivum Traes_4AL_5E7F93445 N 0.000
Traes_4BS_B7A8F8CD8 Triticum aestivum Traes_4BS_B7A8F8CD8 N 0.000
Traes_4DS_0521C8ABF Triticum aestivum Traes_4DS_0521C8ABF N 0.000
Traes_7DS_E5A18AAA4 Triticum aestivum Traes_7DS_E5A18AAA4 I 0.000
TRIUR3_33475 Triticum urartu TRIUR3_33475 I 0.000
PAN Vitis vinifera VIT_01s0011g03230 I 0.000
TGA9 Vitis vinifera VIT_06s0080g00360 I 0.000
VIT_08s0007g05170 Vitis vinifera VIT_08s0007g05170 I 0.000
TGA10 Vitis vinifera VIT_08s0007g06160 I 0.000
VIT_13s0084g00660 Vitis vinifera VIT_13s0084g00660 I 0.000
GRMZM2G019907 Zea mays GRMZM2G019907 I 0.000
GRMZM2G030280 Zea mays GRMZM2G030280 I 0.000
GRMZM2G125243 Zea mays GRMZM2G125243 I 0.000