sna (Drosophila melanogaster)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 FBgn0003448 T114408_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sna
M03670_2.00		 Drosophila melanogaster
TRCACCTGTYVB
VBRACAGGTGYA		 SELEX
Nitta et al.(2015)
sna_1		 (Direct) (Direct)
sna
M05862_2.00		 Drosophila melanogaster
NNVCACCTGTYNN
NNRACAGGTGBNN		 SMiLE-seq
Isakova et al.(2017)
Sna		 (Direct) (Direct)
sna
M06069_2.00		 Drosophila melanogaster
SMACYTGYBN
NVRCARGTKS		 B1H
Zhu et al.(2011)
sna_FlyReg_FBgn0003448		 (Direct) (Direct)
sna
M06070_2.00		 Drosophila melanogaster
SCACCTGWYV
BRWCAGGTGS		 B1H
Zhu et al.(2011)
sna_SANGER_10_FBgn0003448		 (Direct) (Direct)
sna
M06071_2.00		 Drosophila melanogaster
MCACCTGTYVHNNN
NNNDBRACAGGTGK		 B1H
Zhu et al.(2011)
sna_SOLEXA_5_FBgn0003448		 (Direct) (Direct)
sna
M09664_2.00		 Drosophila melanogaster
VMACCTGYB
VRCAGGTKB		 Misc
Kulakovskiy et al.(2009)
sna		 (Direct) (Direct)
sna
M10375_2.00		 Drosophila melanogaster
NKRCACCTGTYNB
VNRACAGGTGYMN		 Transfac
Matys et al.(2006)
I$SN_01		 (Direct) (Direct)
sna
M10376_2.00		 Drosophila melanogaster
WSBHADCAVSTKSK
MSMASBTGHTDVSW		 Transfac
Matys et al.(2006)
I$SN_02		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0080298 C2H2 ZF 245 267
FBpp0080298 C2H2 ZF 280 302
FBpp0080298 C2H2 ZF 306 328
FBpp0080298 C2H2 ZF 334 356
FBpp0080298 C2H2 ZF 362 383

Links

Other C2H2 ZF family TFs
Other Drosophila melanogaster TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0019s00470 Populus trichocarpa POPTR_0019s00470 N
POPTR_0019s00510 Populus trichocarpa POPTR_0019s00510 N
POPTR_0019s03720 Populus trichocarpa POPTR_0019s03720 N
POPTR_0031s00260 Populus trichocarpa POPTR_0031s00260 N
POPTR_0031s00430 Populus trichocarpa POPTR_0031s00430 N