POPTR_0019s11520 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0019s11520 T126851_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.797 0.933
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.797 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0019s11520.1 C2H2 ZF 359 381
POPTR_0019s11520.1 C2H2 ZF 380 411

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_04088 Aegilops tauschii F775_04088 I 0.774
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I 0.774
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I 0.774
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.797
STOP1 Arabidopsis thaliana AT1G34370 D 0.797
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.797
BRADI2G56320 Brachypodium distachyon BRADI2G56320 I 0.774
Bo8g027000 Brassica oleracea Bo8g027000 I 0.797
Bra040971 Brassica rapa Bra040971 I 0.774
PK23301.1 Cannabis sativa PK23301.1 I 0.797
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.797
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.797
Ca_04300 Cicer arietinum Ca_04300 I 0.797
Cla016623 Citrullus lanatus Cla016623 I 0.791
Ciclev10000850m.g Citrus clementina Ciclev10000850m.g I 0.774
orange1.1g009831m.g Citrus sinensis orange1.1g009831m.g I 0.774
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.791
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.788
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.797
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.797
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.797
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.797
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.797
Gorai.006G131700 Gossypium raimondii Gorai.006G131700 I 0.764
MLOC_10987 Hordeum vulgare MLOC_10987 I 0.774
LPERR01G33350 Leersia perrieri LPERR01G33350 I 0.774
LPERR03G34390 Leersia perrieri LPERR03G34390 I 0.763
MDP0000141403 Malus domestica MDP0000141403 I 0.797
MDP0000199559 Malus domestica MDP0000199559 I 0.797
MDP0000453148 Malus domestica MDP0000453148 I 0.764
MDP0000551046 Malus domestica MDP0000551046 I 0.797
MDP0000807856 Malus domestica MDP0000807856 I 0.797
cassava22193.valid.m1 Manihot esculenta cassava22193.valid.m1 I 0.778
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.797
mgf000060m Mimulus guttatus mgf000060m I 0.797
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.797
GSMUA_Achr10G15970_001 Musa acuminata GSMUA_Achr10G15970_001 I 0.768
OBART01G38810 Oryza barthii OBART01G38810 I 0.774
OB01G47470 Oryza brachyantha OB01G47470 I 0.774
OB03G47410 Oryza brachyantha OB03G47410 I 0.763
ORGLA01G0326400 Oryza glaberrima ORGLA01G0326400 I 0.774
BGIOSGA004888 Oryza indica BGIOSGA004888 I 0.774
OLONG_020555 Oryza longistaminata OLONG_020555 I 0.774
ONIVA01G43630 Oryza nivara ONIVA01G43630 I 0.774
OPUNC01G37530 Oryza punctata OPUNC01G37530 I 0.774
ORUFI01G42150 Oryza rufipogon ORUFI01G42150 I 0.774
OS01G0871200 Oryza sativa OS01G0871200 I 0.774
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.797
Pavir.Ia00191 Panicum virgatum Pavir.Ia00191 I 0.763
Pavir.J01834 Panicum virgatum Pavir.J01834 I 0.763
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.797
Pavir.J14096 Panicum virgatum Pavir.J14096 I 0.774
PDK_20s1338731g001 Phoenix dactylifera PDK_20s1338731g001 I 0.768
Pm022201 Prunus mume Pm022201 I 0.797
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.797
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.797
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.797
SELMODRAFT_68340 Selaginella moellendorffii SELMODRAFT_68340 I 0.762
SELMODRAFT_48272 Selaginella moellendorffii SELMODRAFT_48272 I 0.763
SELMODRAFT_58350 Selaginella moellendorffii SELMODRAFT_58350 I 0.763
SELMODRAFT_58361 Selaginella moellendorffii SELMODRAFT_58361 I 0.762
Si036555m.g Setaria italica Si036555m.g I 0.763
Si001053m.g Setaria italica Si001053m.g I 0.774
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.788
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.788
Sb03g041170 Sorghum bicolor Sb03g041170 I 0.774
Sb01g001950 Sorghum bicolor Sb01g001950 I 0.763
TCM_036719 Theobroma cacao TCM_036719 I 0.788
Traes_3AL_00FAACD5D Triticum aestivum Traes_3AL_00FAACD5D I 0.774
TRAES3BF044200110CFD_g Triticum aestivum TRAES3BF044200110CFD_g I 0.774
Traes_3DL_0284E68CC1 Triticum aestivum Traes_3DL_0284E68CC1 I 0.774
TRIUR3_13796 Triticum urartu TRIUR3_13796 I 0.774
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.797
GRMZM2G129428 Zea mays GRMZM2G129428 I 0.774
GRMZM2G075956 Zea mays GRMZM2G075956 I 0.774