SELMODRAFT_48272 (Selaginella moellendorffii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 SELMODRAFT_48272 T128499_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.763 0.822
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.763 0.822
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFJ14225 C2H2 ZF 118 140
EFJ14225 C2H2 ZF 139 170

Links

Other C2H2 ZF family TFs
Other Selaginella moellendorffii TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I 0.768
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I 0.768
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.763
STOP1 Arabidopsis thaliana AT1G34370 D 0.763
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.763
Bo8g027000 Brassica oleracea Bo8g027000 I 0.763
PK23301.1 Cannabis sativa PK23301.1 I 0.763
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.763
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.763
Ca_04300 Cicer arietinum Ca_04300 I 0.763
Cla016623 Citrullus lanatus Cla016623 I 0.757
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.757
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.763
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.763
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.763
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.763
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.763
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.763
LPERR03G34390 Leersia perrieri LPERR03G34390 I 0.763
MDP0000807856 Malus domestica MDP0000807856 I 0.763
MDP0000551046 Malus domestica MDP0000551046 I 0.763
MDP0000199559 Malus domestica MDP0000199559 I 0.763
MDP0000141403 Malus domestica MDP0000141403 I 0.763
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.763
mgf000060m Mimulus guttatus mgf000060m I 0.763
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.763
OB03G47410 Oryza brachyantha OB03G47410 I 0.763
Pavir.Ia00191 Panicum virgatum Pavir.Ia00191 I 0.763
Pavir.J01834 Panicum virgatum Pavir.J01834 I 0.763
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.763
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.763
PDK_20s1338731g001 Phoenix dactylifera PDK_20s1338731g001 I 0.812
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I 0.763
Pm022201 Prunus mume Pm022201 I 0.763
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.763
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.763
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.763
SELMODRAFT_68340 Selaginella moellendorffii SELMODRAFT_68340 I 0.786
SELMODRAFT_58361 Selaginella moellendorffii SELMODRAFT_58361 I 0.786
SELMODRAFT_58353 Selaginella moellendorffii SELMODRAFT_58353 N 0.757
SELMODRAFT_58350 Selaginella moellendorffii SELMODRAFT_58350 I 0.827
SELMODRAFT_48276 Selaginella moellendorffii SELMODRAFT_48276 N 0.767
Si036555m.g Setaria italica Si036555m.g I 0.763
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.773
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.773
Sb01g001950 Sorghum bicolor Sb01g001950 I 0.763
TCM_036719 Theobroma cacao TCM_036719 I 0.763
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.763