CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc03g111590.2
(
Solanum lycopersicum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Solyc03g111590.2
T129355_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc03g111590.2.1
C2H2 ZF
1136
1159
YHCDLEGCSMSFSSKQELTLHKKN
Solyc03g111590.2.1
C2H2 ZF
1160
1183
VCPVEGCKKKFFSHKYLVQHRRVH
Solyc03g111590.2.1
C2H2 ZF
1219
1245
YACSEIGCGQTFRFVSDFSRHKRKTGH
Links
Other
C2H2 ZF
family TFs
Other
Solanum lycopersicum
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_011_00361
Aquilegia coerulea
Aquca_011_00361
N
0.759
evm.TU.supercontig_4.49
Carica papaya
evm.TU.supercontig_4.49
N
0.756
Ciclev10018473m.g
Citrus clementina
Ciclev10018473m.g
N
0.778
Eucgr.K02763
Eucalyptus grandis
Eucgr.K02763
N
0.792
Gorai.006G270100
Gossypium raimondii
Gorai.006G270100
N
0.762
POPTR_0012s09390
Populus trichocarpa
POPTR_0012s09390
N
0.756
PGSC0003DMG400015167
Solanum tuberosum
PGSC0003DMG400015167
N
0.824