Alligator_sinensis_CCG005389.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG005389.1 T133132_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Sp7
M09009_2.00 		Mus musculus
VHAVCCTRTAATTW
WAATTAYAGGBTDB		 Misc
Kulakovskiy et al.(2013)
SP7_MOUSE.H11MO.0.A 		0.821 0.971
SP7
M10258_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSX_Q3 		0.821 0.971
SP8
M02898_2.00 		Homo sapiens
VMCACBCCCMCH
DGKGGGVGTGKB		 SELEX
Jolma et al.(2013)
SP8_1 		0.771 0.884
SP8
M04517_2.00 		Homo sapiens
NMCMCGCCCMYH
DRKGGGCGKGKN		 SELEX
Yin et al.(2017)
SP8_eDBD_HT-SELEX 		0.771 0.884
SP9
M04645_2.00 		Homo sapiens
VMCMCGCCCMYH
DRKGGGCGKGKB		 SELEX
Yin et al.(2017)
SP9_eDBD_HT-SELEX 		0.771 0.884
SP8
M04518_2.00 		Homo sapiens
RHCACGCCCMYH
DRKGGGCGTGDY		 SELEX
Yin et al.(2017)
SP8_eDBD_Methyl-HT-SELEX 		0.771 0.884
SP9
M04646_2.00 		Homo sapiens
RYCACGCCCMYH
DRKGGGCGTGRY		 SELEX
Yin et al.(2017)
SP9_eDBD_Methyl-HT-SELEX 		0.771 0.884
Sp1
M03682_2.00 		Drosophila melanogaster
HNGCCACGCCCARK
MYTGGGCGTGGCND		 SELEX
Nitta et al.(2015)
Sp1_1 		0.758 0.870
Sp1
M06117_2.00 		Drosophila melanogaster
DHYMCGCCCMY
RKGGGCGKRDH		 B1H
Zhu et al.(2011)
Sp1_SANGER_5_FBgn0020378 		0.758 0.870
Sp1
M06118_2.00 		Drosophila melanogaster
NKHHMCGCCCMYNN
NNRKGGGCGKDDMN		 B1H
Zhu et al.(2011)
Sp1_SOLEXA_2.5_FBgn0020378 		0.758 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG005389.1 C2H2 ZF 281 305
Alligator_sinensis_CCG005389.1 C2H2 ZF 311 335
Alligator_sinensis_CCG005389.1 C2H2 ZF 341 363

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.29863s0004 Boechera stricta Bostr.29863s0004 N 0.000
Bostr.19424s0975 Boechera stricta Bostr.19424s0975 N 0.000
Bo5g075210 Brassica oleracea Bo5g075210 N 0.000
Bo9g181220 Brassica oleracea Bo9g181220 N 0.000
Bo9g140760 Brassica oleracea Bo9g140760 N 0.000
Bo7g101500 Brassica oleracea Bo7g101500 N 0.000
Bo7g090920 Brassica oleracea Bo7g090920 N 0.000
Bo7g088580 Brassica oleracea Bo7g088580 N 0.000
Bo7g065570 Brassica oleracea Bo7g065570 N 0.000
Bo7g016140 Brassica oleracea Bo7g016140 N 0.000
Bo6g099260 Brassica oleracea Bo6g099260 N 0.000
Bo6g066940 Brassica oleracea Bo6g066940 N 0.000
Bo5g111170 Brassica oleracea Bo5g111170 N 0.000
Bo1g053550 Brassica oleracea Bo1g053550 N 0.000
Bo4g162580 Brassica oleracea Bo4g162580 N 0.000
Bo4g161430 Brassica oleracea Bo4g161430 N 0.000
Bo4g052050 Brassica oleracea Bo4g052050 N 0.000
Bo4g019810 Brassica oleracea Bo4g019810 N 0.000
Bo4g009340 Brassica oleracea Bo4g009340 N 0.000
Bo3g076300 Brassica oleracea Bo3g076300 N 0.000
Bo2g134150 Brassica oleracea Bo2g134150 N 0.000
Bo2g050430 Brassica oleracea Bo2g050430 N 0.000
Bo1g117730 Brassica oleracea Bo1g117730 N 0.000
Bo1g110110 Brassica oleracea Bo1g110110 N 0.000
Bo1g101740 Brassica oleracea Bo1g101740 N 0.000