Alligator_sinensis_CCG016283.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG016283.1 T133354_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.825 0.991
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.825 0.991
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.825 0.991
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.825 0.991
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.825 0.991
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.825 0.991
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.825 0.991
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.825 0.991
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.825 0.991
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.825 0.991
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.825 0.991
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.825 0.991
SNAI2
M00222_2.00 		Homo sapiens
HACYTGHNNN
NNNDCARGTD		 PBM
Barrera et al.(2016)
SNAI2_T234I 		0.821 0.982
esg
M06050_2.00 		Drosophila melanogaster
CACCTGH
DCAGGTG		 B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981 		0.767 0.816
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG016283.1 C2H2 ZF 128 150
Alligator_sinensis_CCG016283.1 C2H2 ZF 159 181
Alligator_sinensis_CCG016283.1 C2H2 ZF 185 207
Alligator_sinensis_CCG016283.1 C2H2 ZF 213 235
Alligator_sinensis_CCG016283.1 C2H2 ZF 241 262

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000009606 Ailuropoda melanoleuca ENSAMEG00000009606 I 0.825
Alligator_sinensis_CCG001703.1 Alligator sinensis Alligator_sinensis_CCG001703.1 I 0.762
ENSAPLG00000003920 Anas platyrhynchos ENSAPLG00000003920 I 0.827
SNAI2 Anolis carolinensis ENSACAG00000012332 I 0.827
Afo_R005870 Aptenodytes forsteri Afo_R005870 I 0.827
ENSAMXG00000011013 Astyanax mexicanus ENSAMXG00000011013 I 0.783
ENSP00000020945-D1 Bos grunniens ENSP00000020945-D1 I 0.813
SNAI2 Bos taurus ENSBTAG00000013227 I 0.813
Brh_R006038 Buceros rhinoceros Brh_R006038 I 0.827
SNAI2 Callithrix jacchus ENSCJAG00000013499 I 0.825
Aan_R012932 Calypte anna Aan_R012932 I 0.827
SNAI2 Canis familiaris ENSCAFG00000006638 I 0.825
CapteG76255 Capitella teleta CapteG76255 I 0.767
ENSCPOG00000014827 Cavia porcellus ENSCPOG00000014827 I 0.825
Cmyd_10017446 Chelonia mydas Cmyd_10017446 I 0.758
ENSCSAG00000014787 Chlorocebus sabaeus ENSCSAG00000014787 I 0.825
SNAI2 Choloepus hoffmanni ENSCHOG00000007046 I 0.825
KGM_17970 Danaus plexippus KGM_17970 I 0.757
snai2 Danio rerio ENSDARG00000040046 I 0.803
SNAI2 Dasypus novemcinctus ENSDNOG00000035997 I 0.825
GF15382 Drosophila ananassae FBgn0092407 I 0.767
GG25158 Drosophila erecta FBgn0117283 I 0.767
GH13754 Drosophila grimshawi FBgn0121230 I 0.769
esg Drosophila melanogaster FBgn0001981 D 0.767
GI17894 Drosophila mojavensis FBgn0140635 I 0.769
GL26425 Drosophila persimilis FBgn0164007 I 0.767
GA17666 Drosophila pseudoobscura FBgn0077676 I 0.767
GD24004 Drosophila simulans FBgn0195364 I 0.757
GJ17399 Drosophila virilis FBgn0204571 I 0.769
GK18133 Drosophila willistoni FBgn0220132 I 0.769
GE20968 Drosophila yakuba FBgn0238253 I 0.767
SNAI2 Equus caballus ENSECAG00000010120 I 0.825
SNAI2 Felis catus ENSFCAG00000015779 I 0.825
ENSFALG00000005762 Ficedula albicollis ENSFALG00000005762 I 0.827
ENSGMOG00000002669 Gadus morhua ENSGMOG00000002669 I 0.805
ENSGALG00000015241 Gallus gallus ENSGALG00000015241 I 0.825
snai2 Gasterosteus aculeatus ENSGACG00000017935 I 0.803
Gfo_R012649 Geospiza fortis Gfo_R012649 I 0.827
SNAI2 Gorilla gorilla ENSGGOG00000000959 I 0.825
HMEL002306 Heliconius melpomene HMEL002306 I 0.757
SNAI2 Homo sapiens ENSG00000019549 D 0.825
ENSSTOG00000028743 Ictidomys tridecemlineatus ENSSTOG00000028743 I 0.825
ENSLACG00000004705 Latimeria chalumnae ENSLACG00000004705 I 0.778
ENSLACG00000005413 Latimeria chalumnae ENSLACG00000005413 I 0.823
ENSLOCG00000004887 Lepisosteus oculatus ENSLOCG00000004887 I 0.775
ENSLOCG00000005992 Lepisosteus oculatus ENSLOCG00000005992 I 0.807
LDEC001157 Leptinotarsa decemlineata LDEC001157 I 0.769
LotgiG114290 Lottia gigantea LotgiG114290 I 0.761
SNAI2 Loxodonta africana ENSLAFG00000009299 I 0.825
LCUP013268 Lucilia cuprina LCUP013268 I 0.772
ENSP00000380034 Macaca fascicularis ENSP00000380034 I 0.825
SNAI2 Macaca mulatta ENSMMUG00000016195 I 0.825
ENSMEUG00000009510 Macropus eugenii ENSMEUG00000009510 I 0.823
SNAI2 Meleagris gallopavo ENSMGAG00000010813 I 0.827
MCINX001355 Melitaea cinxia MCINX001355 I 0.757
SNAI2 Microcebus murinus ENSMICG00000000335 I 0.825
SNAI2 Monodelphis domestica ENSMODG00000010173 I 0.827
MDOA014024 Musca domestica MDOA014024 I 0.772
ENSMPUG00000010793 Mustela putorius furo ENSMPUG00000010793 I 0.825
Snai2 Mus musculus ENSMUSG00000022676 D 0.825
Myotis_brandtii_Snai2_10018131 Myotis brandtii Myotis_brandtii_Snai2_10018131 I 0.825
SNAI2 Myotis lucifugus ENSMLUG00000001086 I 0.825
ENSNLEG00000013421 Nomascus leucogenys ENSNLEG00000013421 I 0.825
Ogr04681 Ophisaurus gracilis Ogr04681 I 0.827
ENSONIG00000009542 Oreochromis niloticus ENSONIG00000009542 I 0.807
SNAI2 Ornithorhynchus anatinus ENSOANG00000007267 I 0.827
SNAI2 Oryctolagus cuniculus ENSOCUG00000012254 I 0.825
snai2 Oryzias latipes ENSORLG00000017475 I 0.807
SNAI2 Otolemur garnettii ENSOGAG00000010500 I 0.825
ENSOARG00000013030 Ovis aries ENSOARG00000013030 I 0.813
SNAI2 Pan troglodytes ENSPTRG00000020235 I 0.825
ENSPANG00000017540 Papio anubis ENSPANG00000017540 I 0.825
ENSPSIG00000003607 Pelodiscus sinensis ENSPSIG00000003607 I 0.756
ENSPSIG00000016395 Pelodiscus sinensis ENSPSIG00000016395 I 0.827
PPAI008011 Phlebotomus papatasi PPAI008011 I 0.756
ENSPFOG00000014336 Poecilia formosa ENSPFOG00000014336 I 0.803
Pvit_15376 Pogona vitticeps Pvit_15376 I 0.827
ENSPPYG00000018578 Pongo abelii ENSPPYG00000018578 I 0.825
SNAI2 Procavia capensis ENSPCAG00000001788 I 0.825
SNAI2 Pteropus vampyrus ENSPVAG00000009457 I 0.827
Snai2 Rattus norvegicus ENSRNOG00000047699 I 0.825
Sakowv30043351m.g Saccoglossus kowalevskii Sakowv30043351m.g I 0.764
ENSSHAG00000004205 Sarcophilus harrisii ENSSHAG00000004205 I 0.827
ENSSSCG00000024404 Sus scrofa ENSSSCG00000024404 I 0.817
ENSSSCG00000026570 Sus scrofa ENSSSCG00000026570 I 0.817
SNAI2 Taeniopygia guttata ENSTGUG00000010914 I 0.827
snai2 Takifugu rubripes ENSTRUG00000006860 I 0.807
snai2 Tetraodon nigroviridis ENSTNIG00000008504 I 0.807
TC014474 Tribolium castaneum TC014474 I 0.767
Tal_R003673 Tyto alba Tal_R003673 I 0.827
AAB34088 Xenopus laevis AAB34088 I 0.827
AAK54137 Xenopus laevis AAK54137 I 0.827
AAK54139 Xenopus laevis AAK54139 I 0.827
snai2.L Xenopus laevis XB-GENE-6255814 I 0.827
snai1.S Xenopus laevis XB-GENE-865328 I 0.759
snai2.S Xenopus laevis XB-GENE-865699 I 0.827
AAK54135 Xenopus tropicalis AAK54135 I 0.827
snai1 Xenopus tropicalis XB-GENE-479970 I 0.759
snai2 Xenopus tropicalis XB-GENE-487371 I 0.827
ENSXMAG00000019030 Xiphophorus maculatus ENSXMAG00000019030 I 0.803
L798_10614 Zootermopsis nevadensis L798_10614 I 0.757