CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cflo_02153--NP_001035356.1_APIME
(
Camponotus floridanus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cflo_02153--NP_001035356.1_APIME
T133757_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
br
M06028_2.00
Drosophila melanogaster
MACTATY
RATAGTK
B1H
Zhu et al.(2011)
br-PA_SANGER_5_FBgn0000210
0.798
0.933
br
M06029_2.00
Drosophila melanogaster
RWHYNWCTAAYG
CRTTAGWNRDWY
B1H
Zhu et al.(2011)
br-PE_SANGER_5_FBgn0000210
0.798
0.933
br
M06030_2.00
Drosophila melanogaster
TGVTCTHKK
MMDAGABCA
B1H
Zhu et al.(2011)
br-PL_SANGER_5_FBgn0000210
0.798
0.933
br
M06031_2.00
Drosophila melanogaster
TCTAATC
GATTAGA
B1H
Zhu et al.(2011)
br_SANGER_10_FBgn0000210
0.798
0.933
br
M06032_2.00
Drosophila melanogaster
YDTCTAATCDN
NHGATTAGAHR
B1H
Zhu et al.(2011)
br_SOLEXA_10_FBgn0000210
0.798
0.933
br
M06033_2.00
Drosophila melanogaster
TKVTAWTT
AAWTABMA
B1H
Zhu et al.(2011)
br-Z1_FlyReg_FBgn0000210
0.798
0.933
br
M06034_2.00
Drosophila melanogaster
WCTAKBWH
DWVMTAGW
B1H
Zhu et al.(2011)
br-Z2_FlyReg_FBgn0000210
0.798
0.933
br
M06035_2.00
Drosophila melanogaster
AMHARYTN
NARYTDKT
B1H
Zhu et al.(2011)
br-Z3_FlyReg_FBgn0000210
0.798
0.933
br
M06036_2.00
Drosophila melanogaster
ATTAKY
RMTAAT
B1H
Zhu et al.(2011)
br-Z4_FlyReg_FBgn0000210
0.798
0.933
BRC1_DROME
M10097_2.00
Drosophila melanogaster
BDNWYTTGTYWWTKAYHW
WDRTMAWWRACAARWNHV
Transfac
Matys et al.(2006)
I$BRCZ1_01
0.798
0.933
br
M10365_2.00
Drosophila melanogaster
DNBDDWHCTATTYNKY
RMNAAATAGDWHHVNH
Transfac
Matys et al.(2006)
I$BRCZ2_01
0.798
0.933
br
M10366_2.00
Drosophila melanogaster
DNNHYTWGTTTWNHN
NDNWAAACWARDNNH
Transfac
Matys et al.(2006)
I$BRCZ3_01
0.798
0.933
br
M10367_2.00
Drosophila melanogaster
WTWWSTTTMYWWW
WWWRKAAASAWAW
Transfac
Matys et al.(2006)
I$BRCZ4_01
0.798
0.933
br
M08446_2.00
Drosophila melanogaster
NWYTTGTYWWTKAY
RTMAWWRACAARWN
COMPILED
Mathelier et al.(2014)
MA0010.1
0.798
0.933
br
M08447_2.00
Drosophila melanogaster
WHCTAKTY
RAMTAGDW
COMPILED
Mathelier et al.(2014)
MA0011.1
0.798
0.933
br
M08448_2.00
Drosophila melanogaster
NNHYTWGTTTW
WAAACWARDNN
COMPILED
Mathelier et al.(2014)
MA0012.1
0.798
0.933
br
M08449_2.00
Drosophila melanogaster
WTWNTTTAYWW
WWRTAAANWAW
COMPILED
Mathelier et al.(2014)
MA0013.1
0.798
0.933
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cflo_02153--NP_001035356.1_APIME
C2H2 ZF
43
66
FRCEPCNKNLTSLTRLKRHIQNVH
Cflo_02153--NP_001035356.1_APIME
C2H2 ZF
74
96
ICNICKRVYSSLNSLRNHKSIYH
Links
Other
C2H2 ZF
family TFs
Other
Camponotus floridanus
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OBART09G11970
Oryza barthii
OBART09G11970
N
ORGLA09G0090800
Oryza glaberrima
ORGLA09G0090800
N
OGLUM09G12360
Oryza glumaepatula
OGLUM09G12360
N
BGIOSGA030852
Oryza indica
BGIOSGA030852
N
OLONG_002199
Oryza longistaminata
OLONG_002199
N
OMERI09G09450
Oryza meridionalis
OMERI09G09450
N
ONIVA09G12330
Oryza nivara
ONIVA09G12330
N
ORUFI09G12830
Oryza rufipogon
ORUFI09G12830
N
OS09G0444100
Oryza sativa
OS09G0444100
N