ENSBTAP00000008704-D1 (Bos grunniens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 ENSBTAP00000008704-D1 T134520_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gli1
M01023_2.00 		Mus musculus
NGACCACCHN
NDGGTGGTCN		 PBM
Peterson et al.(2012)
Gli1 		0.827 1.000
GLI1
M02643_2.00 		Homo sapiens
GACCACCCAMG
CKTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI1 		0.827 1.000
Gli1
M08976_2.00 		Mus musculus
RGRCCACCCASV
BSTGGGTGGYCY		 Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C 		0.827 1.000
GLI1
M10176_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q2 		0.827 1.000
GLI1
M10177_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3_01 		0.827 1.000
GLI1
M10178_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3 		0.827 1.000
GLI1
M10179_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI_Q6 		0.827 1.000
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.796 0.886
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.796 0.886
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.796 0.886
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.796 0.886
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.796 0.886
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.796 0.886
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.779 0.851
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.779 0.851
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.779 0.851
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.779 0.851
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.779 0.851
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.779 0.851
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.779 0.851
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.779 0.851
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.779 0.851
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000008704-D1 C2H2 ZF 236 260
ENSBTAP00000008704-D1 C2H2 ZF 268 295
ENSBTAP00000008704-D1 C2H2 ZF 301 325
ENSBTAP00000008704-D1 C2H2 ZF 331 356
ENSBTAP00000008704-D1 C2H2 ZF 362 387

Links

Other C2H2 ZF family TFs
Other Bos grunniens TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_047_00006 Aquilegia coerulea Aquca_047_00006 I
ATMYB90 Arabidopsis lyrata scaffold_201358.1 I
scaffold_201357.1 Arabidopsis lyrata scaffold_201357.1 I
MYB113 Arabidopsis lyrata fgenesh2_kg.2__869__AT1G66370.1 I
PAP1 Arabidopsis lyrata fgenesh2_kg.1__4777__AT1G56650.1 I
MYB113 Arabidopsis thaliana AT1G66370 D
MYB75 Arabidopsis thaliana AT1G56650 I
MYB114 Arabidopsis thaliana AT1G66380 I
MYB90 Arabidopsis thaliana AT1G66390 I
Bostr.26959s0279 Boechera stricta Bostr.26959s0279 I
Bo6g100940 Brassica oleracea Bo6g100940 I
Bo6g099880 Brassica oleracea Bo6g099880 I
Bo00835s060 Brassica oleracea Bo00835s060 I
Bra004162 Brassica rapa Bra004162 I
Bra001917 Brassica rapa Bra001917 I
Bra039763 Brassica rapa Bra039763 I
PK05760.1 Cannabis sativa PK05760.1 I
PK17827.1 Cannabis sativa PK17827.1 I
Cagra.2629s0007 Capsella grandiflora Cagra.2629s0007 I
Cagra.0463s0008 Capsella grandiflora Cagra.0463s0008 I
Cagra.0463s0007 Capsella grandiflora Cagra.0463s0007 I
Cagra.2400s0001 Capsella grandiflora Cagra.2400s0001 I
Cagra.0463s0006 Capsella grandiflora Cagra.0463s0006 I
Carubv10020856m.g Capsella rubella Carubv10020856m.g I
evm.TU.supercontig_116.38 Carica papaya evm.TU.supercontig_116.38 I
evm.TU.supercontig_2742.1 Carica papaya evm.TU.supercontig_2742.1 I
Ca_22078 Cicer arietinum Ca_22078 I
Ciclev10013455m.g Citrus clementina Ciclev10013455m.g I
Eucgr.H04157 Eucalyptus grandis Eucgr.H04157 I
Eucgr.F02842 Eucalyptus grandis Eucgr.F02842 I
Thhalv10019041m.g Eutrema salsugineum Thhalv10019041m.g I
gene31413-v1.0-hybrid Fragaria vesca gene31413-v1.0-hybrid I
GLYMA09G36966 Glycine max GLYMA09G36966 I
Gorai.001G087400 Gossypium raimondii Gorai.001G087400 I
Gorai.001G087200 Gossypium raimondii Gorai.001G087200 I
Lus10009129.g Linum usitatissimum Lus10009129.g I
Lus10009130.g Linum usitatissimum Lus10009130.g I
Lus10028513.g Linum usitatissimum Lus10028513.g I
Lus10028514.g Linum usitatissimum Lus10028514.g I
MTR_5g078910 Medicago truncatula MTR_5g078910 I
MTR_0001s0360 Medicago truncatula MTR_0001s0360 I
MTR_8g060940 Medicago truncatula MTR_8g060940 I
MTR_5g079290 Medicago truncatula MTR_5g079290 I
MTR_5g079220 Medicago truncatula MTR_5g079220 I
MTR_5g078950 Medicago truncatula MTR_5g078950 I
MTR_5g078860 Medicago truncatula MTR_5g078860 I
mgf019317m Mimulus guttatus mgf019317m I
mgf022565m Mimulus guttatus mgf022565m I
PDK_20s1447601g001 Phoenix dactylifera PDK_20s1447601g001 I
POPTR_0005s14460 Populus trichocarpa POPTR_0005s14460 I
POPTR_0005s14470 Populus trichocarpa POPTR_0005s14470 I
POPTR_0005s14480 Populus trichocarpa POPTR_0005s14480 I
POPTR_0005s14490 Populus trichocarpa POPTR_0005s14490 I
Pm029445 Prunus mume Pm029445 I
Pm029442 Prunus mume Pm029442 I
Pm029440 Prunus mume Pm029440 I
PRUPE_ppa016711mg Prunus persica PRUPE_ppa016711mg I
PRUPE_ppa024617mg Prunus persica PRUPE_ppa024617mg N
PRUPE_ppa026640mg Prunus persica PRUPE_ppa026640mg I
27763.m000042 Ricinus communis 27763.m000042 I
30128.m008730 Ricinus communis 30128.m008730 I
SapurV1A.0230s0240 Salix purpurea SapurV1A.0230s0240 I
SapurV1A.0230s0250 Salix purpurea SapurV1A.0230s0250 I
SapurV1A.0230s0260 Salix purpurea SapurV1A.0230s0260 I
Solyc10g086290.1 Solanum lycopersicum Solyc10g086290.1 I
Solyc10g086270.1 Solanum lycopersicum Solyc10g086270.1 I
Solyc10g086260.1 Solanum lycopersicum Solyc10g086260.1 I
Solyc10g086250.1 Solanum lycopersicum Solyc10g086250.1 I
TCM_019192 Theobroma cacao TCM_019192 I
VIT_02s0033g00400 Vitis vinifera VIT_02s0033g00400 I
VIT_02s0033g00410 Vitis vinifera VIT_02s0033g00410 I
VIT_02s0033g00450 Vitis vinifera VIT_02s0033g00450 I
VIT_14s0006g01280 Vitis vinifera VIT_14s0006g01280 I
VIT_14s0006g01290 Vitis vinifera VIT_14s0006g01290 I
VIT_14s0006g01340 Vitis vinifera VIT_14s0006g01340 I