Gfo_R012611 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R012611 T135846_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF521
M10318_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZNF521_03 		0.778 0.949
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R012611 C2H2 ZF 107 129
Gfo_R012611 C2H2 ZF 135 157
Gfo_R012611 C2H2 ZF 163 185
Gfo_R012611 C2H2 ZF 191 213
Gfo_R012611 C2H2 ZF 235 258
Gfo_R012611 C2H2 ZF 270 293
Gfo_R012611 C2H2 ZF 300 321
Gfo_R012611 C2H2 ZF 426 449
Gfo_R012611 C2H2 ZF 466 489
Gfo_R012611 C2H2 ZF 502 525
Gfo_R012611 C2H2 ZF 549 574
Gfo_R012611 C2H2 ZF 623 645
Gfo_R012611 C2H2 ZF 653 675
Gfo_R012611 C2H2 ZF 683 706
Gfo_R012611 C2H2 ZF 711 734
Gfo_R012611 C2H2 ZF 741 764
Gfo_R012611 C2H2 ZF 798 821
Gfo_R012611 C2H2 ZF 875 898
Gfo_R012611 C2H2 ZF 919 941
Gfo_R012611 C2H2 ZF 948 970
Gfo_R012611 C2H2 ZF 1214 1236
Gfo_R012611 C2H2 ZF 1245 1268

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_49.157 Carica papaya evm.TU.supercontig_49.157 N
Ciclev10019094m.g Citrus clementina Ciclev10019094m.g N
Ciclev10019083m.g Citrus clementina Ciclev10019083m.g N
orange1.1g005326m.g Citrus sinensis orange1.1g005326m.g N
Gorai.008G106100 Gossypium raimondii Gorai.008G106100 N
Gorai.008G106000 Gossypium raimondii Gorai.008G106000 N
cassava19916.m1 Manihot esculenta cassava19916.m1 N
POPTR_0002s14550 Populus trichocarpa POPTR_0002s14550 N
POPTR_0014s05940 Populus trichocarpa POPTR_0014s05940 N
POPTR_0014s05910 Populus trichocarpa POPTR_0014s05910 N
POPTR_0002s14500 Populus trichocarpa POPTR_0002s14500 N
30174.m008828 Ricinus communis 30174.m008828 N
SapurV1A.0033s0460 Salix purpurea SapurV1A.0033s0460 N
SapurV1A.0033s0490 Salix purpurea SapurV1A.0033s0490 N
SapurV1A.0248s0400 Salix purpurea SapurV1A.0248s0400 N
SapurV1A.0382s0350 Salix purpurea SapurV1A.0382s0350 N
SapurV1A.1971s0010 Salix purpurea SapurV1A.1971s0010 N
Solyc01g090950.2 Solanum lycopersicum Solyc01g090950.2 N
TCM_005571 Theobroma cacao TCM_005571 N
VIT_15s0048g00270 Vitis vinifera VIT_15s0048g00270 N