CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Ocbimv22021426m.g *(Octopus bimaculoides)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00096 (zf-C2H2)	IPR007087	Ocbimv22021426m.g	T141313_2.00	JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
KLF6 M04400_2.00	Homo sapiens	NVMCACRCCCH	DGGGYGTGKBN	SELEX Yin et al.(2017) KLF6_eDBD_HT-SELEX	0.784	0.841
KLF6 M08857_2.00	Homo sapiens	BYBYVNBCYMCDCCCYBBN	NVVRGGGHGKRGVNBRVRV	Misc Kulakovskiy et al.(2013) KLF6_HUMAN.H11MO.0.A	0.784	0.841
Klf6 M08962_2.00	Mus musculus	BYBYVNBCYMCDCCCYBBN	NVVRGGGHGKRGVNBRVRV	Misc Kulakovskiy et al.(2013) KLF6_MOUSE.H11MO.0.B	0.784	0.841
KLF6 M10113_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CPBP_Q6	0.784	0.841
KLF6 M04401_2.00	Homo sapiens	NRCCACGCCCH	DGGGCGTGGYN	SELEX Yin et al.(2017) KLF6_eDBD_Methyl-HT-SELEX	0.784	0.841
Klf7 M00134_2.00	Mus musculus	NHHMCRCCCH	DGGGYGKDDN	PBM Badis et al.(2009) Klf7_0974	0.784	0.826
KLF7 M08298_2.00	Homo sapiens	VVCHMCGCCCH	DGGGCGKDGBB	ChIP-seq Schmitges et al.(2016) O75840.MEME	0.784	0.826
CG42741 M06169_2.00	Drosophila melanogaster	RCCACRCCCWHY	RDWGGGYGTGGY	B1H Zhu et al.(2011) CG9895_SANGER_10_FBgn0034810	0.781	0.841
CG42741 M06170_2.00	Drosophila melanogaster	VRCCACRCCCH	DGGGYGTGGYB	B1H Zhu et al.(2011) CG9895_SOLEXA_5_FBgn0034810	0.781	0.841
Klf12 M00787_2.00	Mus musculus	NNHMCRCCCH	DGGGYGKDNN	PBM Weirauch et al.(2013) pTH0977	0.781	0.826
Klf12 M02937_2.00	Mus musculus	GRCCACGCCCWHHHN	NDDDWGGGCGTGGYC	SELEX Jolma et al.(2013) Klf12_1	0.781	0.826
KLF12 M04430_2.00	Homo sapiens	DRCCACGCCCH	DGGGCGTGGYH	SELEX Yin et al.(2017) KLF12_FL_HT-SELEX	0.781	0.826
KLF12 M08299_2.00	Homo sapiens	SBNVGCCMCGCCCHB	VDGGGCGKGGCBNVS	ChIP-seq Schmitges et al.(2016) Q9Y4X4.MEME	0.781	0.826
KLF12 M08879_2.00	Homo sapiens	GCCCCGCCCYB	VRGGGCGGGGC	Misc Kulakovskiy et al.(2013) KLF12_HUMAN.H11MO.0.C	0.781	0.826
KLF12 M10186_2.00	Homo sapiens	HMYACDG	CHGTRKD	Transfac Matys et al.(2006) V$AP2REP_01	0.781	0.826
KLF12 M04431_2.00	Homo sapiens	RGSCGACGCCCN	NGGGCGTCGSCY	SELEX Yin et al.(2017) KLF12_FL_Methyl-HT-SELEX_1	0.781	0.826
KLF12 M04432_2.00	Homo sapiens	NRCCACGCCCH	DGGGCGTGGYN	SELEX Yin et al.(2017) KLF12_FL_Methyl-HT-SELEX_2	0.781	0.826
klf-3 M00617_2.00	Caenorhabditis elegans	NHMCGCCCH	DGGGCGKDN	PBM Narasimhan et al.(2015) pTH9072	0.777	0.739
KLF3 M04418_2.00	Homo sapiens	RRCCRCGCCCH	DGGGCGYGGYY	SELEX Yin et al.(2017) KLF3_FL_HT-SELEX	0.771	0.841
KLF3 M08876_2.00	Homo sapiens	NSNNVCCMCRCCCHBBBBN	NVVVVDGGGYGKGGBNNSN	Misc Kulakovskiy et al.(2013) KLF3_HUMAN.H11MO.0.B	0.771	0.841
Klf3 M08982_2.00	Mus musculus	NSNNVCCMCRCCCHBBBBN	NVVVVDGGGYGKGGBNNSN	Misc Kulakovskiy et al.(2013) KLF3_MOUSE.H11MO.0.A	0.771	0.841
KLF3 M10172_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$KLF3_Q3_01	0.771	0.841
KLF3 M10173_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$KLF3_Q3	0.771	0.841
KLF3 M04419_2.00	Homo sapiens	DRCCACGCCCH	DGGGCGTGGYH	SELEX Yin et al.(2017) KLF3_FL_Methyl-HT-SELEX_1	0.771	0.841
KLF3 M04420_2.00	Homo sapiens	RRSCGCARCCCN	NGGGYTGCGSYY	SELEX Yin et al.(2017) KLF3_FL_Methyl-HT-SELEX_2	0.771	0.841
luna M03704_2.00	Drosophila melanogaster	RCCACRCCCH	DGGGYGTGGY	SELEX Nitta et al.(2015) luna_1	0.768	0.812
luna M06163_2.00	Drosophila melanogaster	RRMHMCRCCC	GGGYGKDKYY	B1H Zhu et al.(2011) luna_SANGER_5_FBgn0040765	0.768	0.812
luna M06164_2.00	Drosophila melanogaster	DRCCMCGCCCHNNN	NNNDGGGCGKGGYH	B1H Zhu et al.(2011) luna_SOLEXA_5_FBgn0040765	0.768	0.812
dar1 M06171_2.00	Drosophila melanogaster	RMCACACCCWH	DWGGGTGTGKY	B1H Zhu et al.(2011) CG12029_SANGER_10_FBgn0035454	0.765	0.812
dar1 M06172_2.00	Drosophila melanogaster	NNNRCCACRCCCHNN	NNDGGGYGTGGYNNN	B1H Zhu et al.(2011) CG12029_SOLEXA_5_FBgn0035454	0.765	0.812
KLF5 M04410_2.00	Homo sapiens	NMCACRCCCH	DGGGYGTGKN	SELEX Yin et al.(2017) KLF5_eDBD_HT-SELEX	0.759	0.826
KLF5 M08086_2.00	Homo sapiens	BCCMCDCCCH	DGGGHGKGGV	ChIP-seq Mathelier et al.(2014) MA0599.1	0.759	0.826
KLF5 M08868_2.00	Homo sapiens	NHVNRCCMCDCCCH	DGGGHGKGGYNBDN	Misc Kulakovskiy et al.(2013) KLF5_HUMAN.H11MO.0.A	0.759	0.826
Klf5 M08965_2.00	Mus musculus	KCCMCDCCCHBBBCH	DGVVVDGGGHGKGGM	Misc Kulakovskiy et al.(2013) KLF5_MOUSE.H11MO.0.A	0.759	0.826
KLF5 M09502_2.00	Homo sapiens	GCCMCRCCCH	DGGGYGKGGC	Misc Heinz et al.(2010) LoVo-KLF5_GSE49402	0.759	0.826
KLF5 M10149_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$BTEB2_Q3_01	0.759	0.826
KLF5 M10150_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$BTEB2_Q3	0.759	0.826
KLF5 M04411_2.00	Homo sapiens	NMCACRCCYH	DRGGYGTGKN	SELEX Yin et al.(2017) KLF5_eDBD_Methyl-HT-SELEX	0.759	0.826
KLF4 M04463_2.00	Homo sapiens	NVCCACRCCCH	DGGGYGTGGBN	SELEX Yin et al.(2017) KLF4_eDBD_HT-SELEX	0.759	0.812
KLF4 M08091_2.00	Homo sapiens	MCACACCCWNN	NNWGGGTGTGK	ChIP-seq Mathelier et al.(2014) MA0039.3	0.759	0.812
Klf4 M08021_2.00	Mus musculus	VRCCMCRCCCH	DGGGYGKGGYB	ChIP-seq Chen et al.(2011) SRP000217_Klf4	0.759	0.812
KLF4 M08243_2.00	Homo sapiens	RCCMCRCCCH	DGGGYGKGGY	ChIP-seq Najafabadi et al.(2015b) KLF14	0.759	0.812
KLF4 M08894_2.00	Homo sapiens	RCCMCRCCCH	DGGGYGKGGY	Misc Kulakovskiy et al.(2013) KLF4_HUMAN.H11MO.0.A	0.759	0.812
Klf4 M08964_2.00	Mus musculus	GCCMCRCCCWBYBBN	NVVRVWGGGYGKGGC	Misc Kulakovskiy et al.(2013) KLF4_MOUSE.H11MO.0.A	0.759	0.812
KLF4 M10217_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GKLF_02	0.759	0.812
KLF4 M10218_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GKLF_Q3_01	0.759	0.812
KLF4 M10219_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GKLF_Q3	0.759	0.812
KLF4 M10220_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GKLF_Q4	0.759	0.812
KLF4 M04464_2.00	Homo sapiens	NVCCMCRCCCN	NGGGYGKGGBN	SELEX Yin et al.(2017) KLF4_eDBD_Methyl-HT-SELEX	0.759	0.812
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Ocbimv22021426m.p	C2H2 ZF	174	198	HRCDFEGCHKVYTKSSHLKAHRRTH
Ocbimv22021426m.p	C2H2 ZF	204	228	YVCNWDGCTWRFARSDELTRHFRKH
Ocbimv22021426m.p	C2H2 ZF	234	256	FKCQVCERAFSRSDHLSLHMKRH

Links
Other C2H2 ZF family TFs
Other *Octopus bimaculoides* TFs

615 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Ca_16539	Cicer arietinum	Ca_16539	N	0.000
Cucsa.174600	Cucumis sativus	Cucsa.174600	I	0.000
Thhalv10017520m.g	Eutrema salsugineum	Thhalv10017520m.g	N	0.000
GLYMA06G22790	Glycine max	GLYMA06G22790	N	0.000
OBART02G30940	Oryza barthii	OBART02G30940	N	0.000
OGLUM02G31630	Oryza glumaepatula	OGLUM02G31630	N	0.000
ORUFI02G32620	Oryza rufipogon	ORUFI02G32620	N	0.000
PDK_20s1466661g003	Phoenix dactylifera	PDK_20s1466661g003	N	0.000
PDK_20s1615261g001	Phoenix dactylifera	PDK_20s1615261g001	N	0.000
Pm025009	Prunus mume	Pm025009	N	0.000
PGSC0003DMG400024523	Solanum tuberosum	PGSC0003DMG400024523	N	0.000

Ocbimv22021426m.g (Octopus bimaculoides) C2H2 ZF

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

615 Related TFs

Ocbimv22021426m.g **(Octopus bimaculoides)
C2H2 ZF**