Sakowv30043351m.g (Saccoglossus kowalevskii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Sakowv30043351m.g T142488_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
esg
M06050_2.00 		Drosophila melanogaster
CACCTGH
DCAGGTG		 B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981 		0.790 0.850
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.764 0.858
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.764 0.858
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.764 0.858
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.764 0.858
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.764 0.858
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.764 0.858
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.764 0.858
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.764 0.858
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.764 0.858
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.764 0.858
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.764 0.858
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.764 0.858
SNAI2
M00222_2.00 		Homo sapiens
HACYTGHNNN
NNNDCARGTD		 PBM
Barrera et al.(2016)
SNAI2_T234I 		0.760 0.850
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23954104_peptide C2H2 ZF 145 167
23954104_peptide C2H2 ZF 176 198
23954104_peptide C2H2 ZF 202 224
23954104_peptide C2H2 ZF 230 252
23954104_peptide C2H2 ZF 258 278

Links

Other C2H2 ZF family TFs
Other Saccoglossus kowalevskii TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_023080 Acremonium chrysogenum ACRE_023080 N
CHGG_10305 Chaetomium globosum CHGG_10305 N
CTHT_0008850 Chaetomium thermophilum CTHT_0008850 N
CFIO01_03141 Colletotrichum fioriniae CFIO01_03141 N
GLRG_08744 Colletotrichum graminicola GLRG_08744 N
CH063_03819 Colletotrichum higginsianum CH063_03819 N
CSUB01_11633 Colletotrichum sublineola CSUB01_11633 N
estExt_fgenesh1_pg.C_20667 Cryphonectria parasitica estExt_fgenesh1_pg.C_20667 N
FFUJ_09747 Fusarium fujikuroi FFUJ_09747 N
FOXG_13954 Fusarium oxysporum FOXG_13954 N
NechaG71246 Fusarium solani NechaG71246 N
FVEG_11376 Fusarium verticillioides FVEG_11376 N
CMQ_4400 Grosmannia clavigera CMQ_4400 N
MYCTH_2312477 Myceliophthora thermophila MYCTH_2312477 N
estExt_Genewise1Plus.C_sca_11_chr8_3_00004 Nectria haematococca estExt_Genewise1Plus.C_sca_11_chr8_3_00004 N
PODANS_6_5270 Podospora anserina PODANS_6_5270 N
SPBR_03635 Sporothrix brasiliensis SPBR_03635 N
HMPREF1624_08493 Sporothrix schenckii HMPREF1624_08493 N
S40288_06333 Stachybotrys chartarum S40288_06333 N
S40285_07194 Stachybotrys chlorohalonata S40285_07194 N
THITE_2124226 Thielavia terrestris THITE_2124226 N
UCRPA7_7490 Togninia minima UCRPA7_7490 N