Bostr.1040s0032 (Boechera stricta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Bostr.1040s0032 T142567_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.827 1.000
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.1040s0032.1.p C2H2 ZF 344 366
Bostr.1040s0032.1.p C2H2 ZF 365 396

Links

Other C2H2 ZF family TFs
Other Boechera stricta TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI2G11890 Brachypodium distachyon BRADI2G11890 I 0.000
Eucgr.K02780 Eucalyptus grandis Eucgr.K02780 I 0.000
Eucgr.K02193 Eucalyptus grandis Eucgr.K02193 I 0.000
MLOC_51143 Hordeum vulgare MLOC_51143 I 0.000
LPERR09G02820 Leersia perrieri LPERR09G02820 I 0.000
LPERR09G02840 Leersia perrieri LPERR09G02840 I 0.000
mgf021642m Mimulus guttatus mgf021642m I 0.000
OBART01G06430 Oryza barthii OBART01G06430 I 0.000
OB09G12530 Oryza brachyantha OB09G12530 I 0.000
ORGLA09G0030400 Oryza glaberrima ORGLA09G0030400 I 0.000
ORGLA09G0030300 Oryza glaberrima ORGLA09G0030300 I 0.000
ORGLA01G0108600 Oryza glaberrima ORGLA01G0108600 I 0.000
OGLUM09G04690 Oryza glumaepatula OGLUM09G04690 I 0.000
OGLUM09G04680 Oryza glumaepatula OGLUM09G04680 I 0.000
BGIOSGA038064 Oryza indica BGIOSGA038064 I 0.000
BGIOSGA030065 Oryza indica BGIOSGA030065 I 0.000
BGIOSGA003364 Oryza indica BGIOSGA003364 I 0.000
OLONG_020978 Oryza longistaminata OLONG_020978 I 0.000
OMERI09G03020 Oryza meridionalis OMERI09G03020 I 0.000
OMERI09G03030 Oryza meridionalis OMERI09G03030 I 0.000
OMERI12G11270 Oryza meridionalis OMERI12G11270 I 0.000
ONIVA09G04180 Oryza nivara ONIVA09G04180 I 0.000
ONIVA09G04210 Oryza nivara ONIVA09G04210 I 0.000
OPUNC01G12900 Oryza punctata OPUNC01G12900 I 0.000
OPUNC09G03530 Oryza punctata OPUNC09G03530 I 0.000
OPUNC09G03540 Oryza punctata OPUNC09G03540 I 0.000
ORUFI09G04400 Oryza rufipogon ORUFI09G04400 I 0.000
ORUFI09G04420 Oryza rufipogon ORUFI09G04420 I 0.000
OS01G0313300 Oryza sativa OS01G0313300 I 0.000
OS09G0286600 Oryza sativa OS09G0286600 I 0.000
OS09G0287000 Oryza sativa OS09G0287000 I 0.000
Pavir.J08480 Panicum virgatum Pavir.J08480 I 0.000
Pavir.Eb02324 Panicum virgatum Pavir.Eb02324 I 0.000
SELMODRAFT_17703 Selaginella moellendorffii SELMODRAFT_17703 I 0.000
SELMODRAFT_73134 Selaginella moellendorffii SELMODRAFT_73134 I 0.000
SELMODRAFT_73164 Selaginella moellendorffii SELMODRAFT_73164 I 0.000
SELMODRAFT_73169 Selaginella moellendorffii SELMODRAFT_73169 I 0.000
Si002845m.g Setaria italica Si002845m.g I 0.000
Solyc03g118190.2 Solanum lycopersicum Solyc03g118190.2 I 0.000
Solyc04g051360.2 Solanum lycopersicum Solyc04g051360.2 I 0.000
PGSC0003DMG400014240 Solanum tuberosum PGSC0003DMG400014240 I 0.000
PGSC0003DMG400019693 Solanum tuberosum PGSC0003DMG400019693 I 0.000
Sb07g022180 Sorghum bicolor Sb07g022180 I 0.000
Sb03g012890 Sorghum bicolor Sb03g012890 I 0.000
Traes_2BS_5E7287209 Triticum aestivum Traes_2BS_5E7287209 I 0.000
TRAES3BF171600010CFD_g Triticum aestivum TRAES3BF171600010CFD_g I 0.000
Traes_5BL_98D063967 Triticum aestivum Traes_5BL_98D063967 I 0.000
Traes_5DL_41E3B1B23 Triticum aestivum Traes_5DL_41E3B1B23 I 0.000
A5JTT1_WHEAT Triticum aestivum A5JTT1_WHEAT D 0.000
Traes_2AS_72E9B68D2 Triticum aestivum Traes_2AS_72E9B68D2 I 0.000
GRMZM2G169382 Zea mays GRMZM2G169382 I 0.000
GRMZM2G053503 Zea mays GRMZM2G053503 I 0.000