Carubv10015674m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10015674m.g T142718_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G15740
M06810_2.00 		Arabidopsis thaliana
WCGHHDYCGWY
RWCGRHDDCGW		 Dap-seq
OMalley et al.(2016)
AT2G15740_col_a 		0.768 0.826
AT5G22990
M06821_2.00 		Arabidopsis thaliana
WCGWHDTCGWYNHNN
NNDNRWCGAHDWCGW		 Dap-seq
OMalley et al.(2016)
AT5G22990_col_a 		0.766 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015674m C2H2 ZF 35 57

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_52642 Aegilops tauschii F775_52642 N
Al_scaffold_0004_1965 Arabidopsis lyrata Al_scaffold_0004_1965 N
fgenesh1_pm.C_scaffold_1002485 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002485 N
BHLH52 Arabidopsis thaliana AT1G30670 N
BHLH53 Arabidopsis thaliana AT2G34820 N
Bostr.15697s0367 Boechera stricta Bostr.15697s0367 N
Bostr.23794s0621 Boechera stricta Bostr.23794s0621 N
BRADI4G29370 Brachypodium distachyon BRADI4G29370 N
Bo4g182930 Brassica oleracea Bo4g182930 N
Bo4g039270 Brassica oleracea Bo4g039270 N
Bo3g028090 Brassica oleracea Bo3g028090 N
Bra005389 Brassica rapa Bra005389 N
Bra021933 Brassica rapa Bra021933 N
Bra022993 Brassica rapa Bra022993 N
Cagra.1508s0136 Capsella grandiflora Cagra.1508s0136 N
Carubv10011063m.g Capsella rubella Carubv10011063m.g N
Ciclev10017579m.g Citrus clementina Ciclev10017579m.g N
orange1.1g041370m.g Citrus sinensis orange1.1g041370m.g N
Thhalv10017751m.g Eutrema salsugineum Thhalv10017751m.g N
Lus10005451.g Linum usitatissimum Lus10005451.g N
Lus10038432.g Linum usitatissimum Lus10038432.g N
OB12G20560 Oryza brachyantha OB12G20560 N
ORGLA12G0114800 Oryza glaberrima ORGLA12G0114800 N
OGLUM12G14400 Oryza glumaepatula OGLUM12G14400 N
BGIOSGA037431 Oryza indica BGIOSGA037431 N
ONIVA12G13030 Oryza nivara ONIVA12G13030 N
OPUNC12G11490 Oryza punctata OPUNC12G11490 N
ORUFI12G13970 Oryza rufipogon ORUFI12G13970 N
Pm010610 Prunus mume Pm010610 N
PRUPE_ppa017597mg Prunus persica PRUPE_ppa017597mg N
Si038598m.g Setaria italica Si038598m.g N
Traes_5BL_B55F708EC Triticum aestivum Traes_5BL_B55F708EC N
Traes_5DL_84C86F76D Triticum aestivum Traes_5DL_84C86F76D N