Pavir.J12018 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J12018 T143410_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.827 0.930
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.827 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J12018.1.p C2H2 ZF 127 149
Pavir.J12018.1.p C2H2 ZF 149 175

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI3G54817 Brachypodium distachyon BRADI3G54817 N 0.000
Gorai.004G221300 Gossypium raimondii Gorai.004G221300 N 0.000
LPERR10G09740 Leersia perrieri LPERR10G09740 N 0.000
Lus10022915.g Linum usitatissimum Lus10022915.g N 0.000
GSMUA_Achr1G20530_001 Musa acuminata GSMUA_Achr1G20530_001 N 0.000
GSMUA_Achr5G18670_001 Musa acuminata GSMUA_Achr5G18670_001 N 0.000
GSMUA_AchrUn_randomG02760_001 Musa acuminata GSMUA_AchrUn_randomG02760_001 N 0.000
OBART10G13230 Oryza barthii OBART10G13230 N 0.000
OB0039G10090 Oryza brachyantha OB0039G10090 N 0.000
BGIOSGA033132 Oryza indica BGIOSGA033132 N 0.000
OLONG_025417 Oryza longistaminata OLONG_025417 N 0.000
OMERI10G10050 Oryza meridionalis OMERI10G10050 N 0.000
ONIVA10G14530 Oryza nivara ONIVA10G14530 N 0.000
OPUNC10G11640 Oryza punctata OPUNC10G11640 N 0.000
ORUFI10G14000 Oryza rufipogon ORUFI10G14000 N 0.000
OS10G0477600 Oryza sativa OS10G0477600 N 0.000
Pavir.Ib03261 Panicum virgatum Pavir.Ib03261 N 0.000
Pavir.J11268 Panicum virgatum Pavir.J11268 N 0.000
Si036835m.g Setaria italica Si036835m.g N 0.000
GRMZM2G062009 Zea mays GRMZM2G062009 N 0.000