ASU_13052 (Ascaris suum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 ASU_13052 T152338_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sptf-3
M00632_2.00 		Caenorhabditis elegans
NNMCGCCCMY
RKGGGCGKNN		 PBM
Narasimhan et al.(2015)
pTH9394 		0.820 0.928
Sp1
M00765_2.00 		Mus musculus
NMCGCCCMY
RKGGGCGKN		 PBM
Weirauch et al.(2013)
pTH0978 		0.766 0.768
SP1
M02921_2.00 		Homo sapiens
RCCMCDCCCMH
DKGGGHGKGGY		 SELEX
Jolma et al.(2013)
SP1_1 		0.766 0.768
SP1
M04605_2.00 		Homo sapiens
NWRRCCACGCCCMCH
DGKGGGCGTGGYYWN		 SELEX
Yin et al.(2017)
SP1_eDBD_HT-SELEX 		0.766 0.768
SP1
M08096_2.00 		Homo sapiens
BYCCCKCCCCY
RGGGGMGGGRV		 ChIP-seq
Mathelier et al.(2014)
MA0079.3 		0.766 0.768
SP1
M08363_2.00 		Homo sapiens
CCCHNBCYCCDCCCY
RGGGHGGRGVNDGGG		 ChIP-seq
Schmitges et al.(2016)
P08047.MEME 		0.766 0.768
SP1
M08938_2.00 		Homo sapiens
BCSSSBCCHVGCCCCGCCCCYN
NRGGGGCGGGGCBDGGVSSSGV		 Misc
Kulakovskiy et al.(2013)
SP1_HUMAN.H11MO.0.A 		0.766 0.768
Sp1
M08963_2.00 		Mus musculus
CCCBKCYCCKCCCCCNBCYCSBSC
GSVSGRGVNGGGGGMGGRGMVGGG		 Misc
Kulakovskiy et al.(2013)
SP1_MOUSE.H11MO.0.A 		0.766 0.768
SP1
M10294_2.00 		Homo sapiens
DSCMHGCCYH
DRGGCDKGSH		 Transfac
Matys et al.(2006)
V$SP1_01 		0.766 0.768
SP1
M10295_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_02 		0.766 0.768
SP1
M10296_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_07 		0.766 0.768
SP1
M10297_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_08 		0.766 0.768
SP1
M10298_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_Q2_02 		0.766 0.768
SP1
M10299_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_Q3 		0.766 0.768
SP1
M10300_2.00 		Homo sapiens
VVCCCCGCCCMBN
NVKGGGCGGGGBB		 Transfac
Matys et al.(2006)
V$SP1_Q6 		0.766 0.768
SP1
M04606_2.00 		Homo sapiens
NWRGCCMCGCCCMYH
DRKGGGCGKGGCYWN		 SELEX
Yin et al.(2017)
SP1_eDBD_Methyl-HT-SELEX 		0.766 0.768
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ASU_13052 C2H2 ZF 264 286
ASU_13052 C2H2 ZF 292 316
ASU_13052 C2H2 ZF 322 344

Links

Other C2H2 ZF family TFs
Other Ascaris suum TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.000
SRM1 Arabidopsis thaliana AT5G08520 D 0.000
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.000
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.000
Bo2g009130 Brassica oleracea Bo2g009130 I 0.000
Bo9g174380 Brassica oleracea Bo9g174380 I 0.000
Bra009346 Brassica rapa Bra009346 I 0.000
Bra028654 Brassica rapa Bra028654 I 0.000
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.000
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.000
Cla009230 Citrullus lanatus Cla009230 I 0.000
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.000
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.000
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.000
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.000
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.000
Thhalv10005383m.g Eutrema salsugineum Thhalv10005383m.g I 0.000
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.000
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.000
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.000
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.000
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.000
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.000
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.000
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.000
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.000
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.000
30131.m007263 Ricinus communis 30131.m007263 I 0.000
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.000
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.000
TCM_007672 Theobroma cacao TCM_007672 I 0.000