L893_g23908 (Steinernema glaseri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 L893_g23908 T154666_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
blmp-1
M08103_2.00 		Caenorhabditis elegans
YTYTCHYTTTY
RAAARDGARAR		 ChIP-seq
Mathelier et al.(2014)
MA0537.1 		0.770 0.825
blmp-1
M08195_2.00 		Caenorhabditis elegans
VACTTTCDCY
RGHGAAAGTB		 ChIP-seq
Contrino et al.(2012)
Mw137 		0.770 0.825
Blimp-1
M03692_2.00 		Drosophila melanogaster
NNYACTTTCVYYN
NRRBGAAAGTRNN		 SELEX
Nitta et al.(2015)
Blimp-1_1 		0.759 0.816
Blimp-1
M06141_2.00 		Drosophila melanogaster
ACTTTCACTTTY
RAAAGTGAAAGT		 B1H
Zhu et al.(2011)
Blimp-1_NAR_FBgn0035625 		0.759 0.816
Blimp-1
M06142_2.00 		Drosophila melanogaster
RCTTTCMCTTTY
RAAAGKGAAAGY		 B1H
Zhu et al.(2011)
Blimp-1_SANGER_5_FBgn0035625 		0.759 0.816
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L893_g23908.t1 C2H2 ZF 24 46
L893_g23908.t1 C2H2 ZF 52 74
L893_g23908.t1 C2H2 ZF 80 102
L893_g23908.t1 C2H2 ZF 108 130
L893_g23908.t1 C2H2 ZF 136 157

Links

Other C2H2 ZF family TFs
Other Steinernema glaseri TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI000849 Acyrthosiphon pisum ACYPI000849 I
ANCCAN_13506 Ancylostoma caninum ANCCAN_13506 I 0.765
ANCCEY_05862 Ancylostoma ceylanicum ANCCEY_05862 I 0.765
ANCDUO_02710 Ancylostoma duodenale ANCDUO_02710 I 0.765
GB51060 Apis mellifera GB51060 I 0.759
ASU_05469 Ascaris suum ASU_05469 I 0.779
ACEP26221 Atta cephalotes ACEP26221 I 0.759
Bm3574 Brugia malayi Bm3574 I 0.765
BTMF_0000836601 Brugia timori BTMF_0000836601 I 0.765
BXY_0993100 Bursaphelenchus xylophilus BXY_0993100 I 0.758
Cflo_04377--XP_391847.3_APIME Camponotus floridanus Cflo_04377--XP_391847.3_APIME I 0.759
CLEC009125 Cimex lectularius CLEC009125 I 0.759
DAPPUDRAFT_319330 Daphnia pulex DAPPUDRAFT_319330 I 0.759
nDi.2.2.2.g10740 Dirofilaria immitis nDi.2.2.2.g10740 I 0.765
DME_0000608401 Dracunculus medinensis DME_0000608401 I 0.767
HCOI00760100 Haemonchus contortus HCOI00760100 I 0.765
HPLM_0001789201 Haemonchus placei HPLM_0001789201 I 0.765
HHAL002221-PA Halyomorpha halys HHAL002221-PA I 0.759
LOAG_11444 Loa loa LOAG_11444 I 0.765
snap_masked-nMf.1.1.scaf01565-processed-gene-0.4 Meloidogyne floridensis snap_masked-nMf.1.1.scaf01565-processed-gene-0.4 N
MhA1_Contig1748.frz3.gene3 Meloidogyne hapla MhA1_Contig1748.frz3.gene3 N
NBR_0002088601 Nippostrongylus brasiliensis NBR_0002088601 I 0.765
nOo.2.0.1.g07043 Onchocerca ochengi nOo.2.0.1.g07043 I 0.765
WBGene00238199 Onchocerca volvulus WBGene00238199 I 0.765
scaffold607-EXSNAP2012.2 Pristionchus exspectatus scaffold607-EXSNAP2012.2 N
Ppa-blmp-1 Pristionchus pacificus PPA04977 N
RPRC001983 Rhodnius prolixus RPRC001983 I 0.759
SINV14078 Solenopsis invicta SINV14078 I 0.759
SMAR011793 Strigamia maritima SMAR011793 I 0.759
TELCIR_19105 Teladorsagia circumcincta TELCIR_19105 I 0.765
TCLT_0000472801 Thelazia callipaeda TCLT_0000472801 I 0.769
TCNE_0001220201 Toxocara canis TCNE_0001220201 I 0.779
D917_07972 Trichinella nativa D917_07972 I 0.758
EFV52614 Trichinella spiralis EFV52614 I
TMUE_s0064002300 Trichuris muris TMUE_s0064002300 I
D918_01175 Trichuris suis D918_01175 I
TTRE_0000156401 Trichuris trichiura TTRE_0000156401 I
WUBG_04696 Wuchereria bancrofti WUBG_04696 I 0.765
L798_14234 Zootermopsis nevadensis L798_14234 I 0.759