PTRK_0000799900 (Parastrongyloides trichosuri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PTRK_0000799900 T155741_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ref-2
M00621_2.00 		Caenorhabditis elegans
CMYRSNGNBH
DVNCNSYRKG		 PBM
Narasimhan et al.(2015)
pTH9089 		0.779 0.761
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.755 0.793
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.755 0.793
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.755 0.793
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.755 0.793
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.755 0.793
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PTRK_0000799900.1 C2H2 ZF 212 239
PTRK_0000799900.1 C2H2 ZF 245 267
PTRK_0000799900.1 C2H2 ZF 273 297
PTRK_0000799900.1 C2H2 ZF 303 327

Links

Other C2H2 ZF family TFs
Other Parastrongyloides trichosuri TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF333 Canis familiaris ENSCAFG00000030256 I
ZNF333 Otolemur garnettii ENSOGAG00000028879 I
ZNF333 Pteropus vampyrus ENSPVAG00000006967 I
ENSTSYG00000010668 Tarsius syrichta ENSTSYG00000010668 I
ZNF333 Tupaia belangeri ENSTBEG00000002418 I
ZNF333 Tursiops truncatus ENSTTRG00000012400 I