nLs.2.1.2.g09672 (Litomosoides sigmodontis)
C2HC ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01530 (zf-C2HC) IPR002515 nLs.2.1.2.g09672 T159658_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ztf-11
M00650_2.00 		Caenorhabditis elegans
VAAGTTTN
NAAACTTB		 PBM
Narasimhan et al.(2015)
pTH9925 		0.930 0.930
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nLs.2.1.2.t09672-RA C2HC ZF 89 116
nLs.2.1.2.t09672-RA C2HC ZF 135 163

Links

Other C2HC ZF family TFs
Other Litomosoides sigmodontis TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_01009 Aegilops tauschii F775_01009 N 0.000
F775_02805 Aegilops tauschii F775_02805 N 0.000
F775_04526 Aegilops tauschii F775_04526 N 0.000
Bostr.19427s0042 Boechera stricta Bostr.19427s0042 I 0.000
MLOC_56065 Hordeum vulgare MLOC_56065 N 0.000
LPERR03G08340 Leersia perrieri LPERR03G08340 N 0.000
OBART03G09330 Oryza barthii OBART03G09330 N 0.000
OB03G19470 Oryza brachyantha OB03G19470 N 0.000
OGLUM03G09410 Oryza glumaepatula OGLUM03G09410 N 0.000
BGIOSGA011179 Oryza indica BGIOSGA011179 N 0.000
OMERI03G08710 Oryza meridionalis OMERI03G08710 N 0.000
ONIVA02G39270 Oryza nivara ONIVA02G39270 N 0.000
OPUNC03G08950 Oryza punctata OPUNC03G08950 N 0.000
ORUFI03G09460 Oryza rufipogon ORUFI03G09460 N 0.000
OS03G0229100 Oryza sativa OS03G0229100 N 0.000
Pavir.Ha01098 Panicum virgatum Pavir.Ha01098 N 0.000
Pavir.Hb01590 Panicum virgatum Pavir.Hb01590 N 0.000
Traes_4BL_2F534B325 Triticum aestivum Traes_4BL_2F534B325 N 0.000
Traes_4DL_F822F371E Triticum aestivum Traes_4DL_F822F371E N 0.000