LIN28B (Homo sapiens)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSG00000187772 T164569_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00		 Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX		 (Direct) (Direct)
LIN28B
M04664_2.00		 Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000344401 CSD 30 102

Links

Other CSD family TFs
Other Homo sapiens TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH039 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001751 N
ORG2 Arabidopsis thaliana AT3G56970 N
Bostr.20505s0056 Boechera stricta Bostr.20505s0056 N
Bostr.20505s0055 Boechera stricta Bostr.20505s0055 N
Bo01495s010 Brassica oleracea Bo01495s010 N
Bo4g112570 Brassica oleracea Bo4g112570 N
Bo4g112590 Brassica oleracea Bo4g112590 N
Bo6g072500 Brassica oleracea Bo6g072500 N
Bo6g072510 Brassica oleracea Bo6g072510 N
Bra014658 Brassica rapa Bra014658 N
Bra014657 Brassica rapa Bra014657 N
Bra014654 Brassica rapa Bra014654 N
Bra003260 Brassica rapa Bra003260 N
Cagra.0578s0027 Capsella grandiflora Cagra.0578s0027 N
Cagra.0578s0028 Capsella grandiflora Cagra.0578s0028 N
Carubv10017770m.g Capsella rubella Carubv10017770m.g N
Thhalv10006491m.g Eutrema salsugineum Thhalv10006491m.g N
Thhalv10006191m.g Eutrema salsugineum Thhalv10006191m.g N
Thhalv10006189m.g Eutrema salsugineum Thhalv10006189m.g N
gene27422-v1.0-hybrid Fragaria vesca gene27422-v1.0-hybrid N
POPTR_0006s03590 Populus trichocarpa POPTR_0006s03590 N
POPTR_0006s03560 Populus trichocarpa POPTR_0006s03560 N
SapurV1A.0196s0420 Salix purpurea SapurV1A.0196s0420 N
Solyc10g079660.1 Solanum lycopersicum Solyc10g079660.1 N