LIN28B (Otolemur garnettii)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSOGAG00000011042 T164698_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		1.000 1.000
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000009883 CSD 30 102

Links

Other CSD family TFs
Other Otolemur garnettii TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI32234 Acyrthosiphon pisum ACYPI32234 I
AAEL009442 Aedes aegypti AAEL009442 I
ENSAMEG00000001342 Ailuropoda melanoleuca ENSAMEG00000001342 I
ENSAMEG00000018337 Ailuropoda melanoleuca ENSAMEG00000018337 I
Alligator_sinensis_CCG002912.1 Alligator sinensis Alligator_sinensis_CCG002912.1 I
ENSAPLG00000011380 Anas platyrhynchos ENSAPLG00000011380 I
ENSAPLG00000012304 Anas platyrhynchos ENSAPLG00000012304 I
ATF3 Anolis carolinensis ENSACAG00000006353 I
FOSL1 Anolis carolinensis ENSACAG00000010103 I
JDP2 Anolis carolinensis ENSACAG00000016944 I
AARA001983 Anopheles arabiensis AARA001983 I
AATE020966 Anopheles atroparvus AATE020966 I
ACUA018111 Anopheles culicifacies ACUA018111 I
ADIR009888 Anopheles dirus ADIR009888 I
AEPI006169 Anopheles epiroticus AEPI006169 I
AFAF020202 Anopheles farauti AFAF020202 I
AFUN001209 Anopheles funestus AFUN001209 I
AMEM000126 Anopheles merus AMEM000126 I
AMIN002428 Anopheles minimus AMIN002428 I
ASTEI05449 Anopheles stephensi ASTEI05449 I
GB53401 Apis mellifera GB53401 I
Afo_R004508 Aptenodytes forsteri Afo_R004508 I
Afo_R004731 Aptenodytes forsteri Afo_R004731 I
ENSAMXG00000010494 Astyanax mexicanus ENSAMXG00000010494 I
ENSAMXG00000013804 Astyanax mexicanus ENSAMXG00000013804 I
ENSAMXG00000014502 Astyanax mexicanus ENSAMXG00000014502 I
ENSBTAP00000011265-D1 Bos grunniens ENSBTAP00000011265-D1 I
ENSP00000267569-D1 Bos grunniens ENSP00000267569-D1 I
ATF3 Bos taurus ENSBTAG00000008545 I
JDP2 Bos taurus ENSBTAG00000009451 I
Brh_R009866 Buceros rhinoceros Brh_R009866 I
Brh_R010146 Buceros rhinoceros Brh_R010146 I
ATF3 Callithrix jacchus ENSCJAG00000015735 I
JDP2 Callithrix jacchus ENSCJAG00000020645 I
Aan_R000237 Calypte anna Aan_R000237 I
Aan_R005677 Calypte anna Aan_R005677 I
Aan_R011482 Calypte anna Aan_R011482 I
Cflo_05052--XP_392513.1_APIME Camponotus floridanus Cflo_05052--XP_392513.1_APIME I
ATF3 Canis familiaris ENSCAFG00000012339 I
JDP2 Canis familiaris ENSCAFG00000017042 I
ENSCPOG00000006636 Cavia porcellus ENSCPOG00000006636 I
ENSCPOG00000019424 Cavia porcellus ENSCPOG00000019424 I
Cmyd_10020806 Chelonia mydas Cmyd_10020806 I
ENSCSAG00000012122 Chlorocebus sabaeus ENSCSAG00000012122 I
ENSCSAG00000015405 Chlorocebus sabaeus ENSCSAG00000015405 I
ATF3 Choloepus hoffmanni ENSCHOG00000010259 I
CLEC002857 Cimex lectularius CLEC002857 I
ENSCSAVG00000000153 Ciona savignyi ENSCSAVG00000000153 I
CpipJ_CPIJ001204 Culex pipiens CpipJ_CPIJ001204 I
CPIJ001204 Culex quinquefasciatus CPIJ001204 I
KGM_03513 Danaus plexippus KGM_03513 I
atf3 Danio rerio ENSDARG00000007823 I
jdp2b Danio rerio ENSDARG00000020133 I
jdp2a Danio rerio ENSDARG00000040137 I
DAPPUDRAFT_222762 Daphnia pulex DAPPUDRAFT_222762 I
JDP2 Dasypus novemcinctus ENSDNOG00000033141 I
ENSDNOG00000044236 Dasypus novemcinctus ENSDNOG00000044236 I
ENSDORG00000006025 Dipodomys ordii ENSDORG00000006025 I
ENSDORG00000012888 Dipodomys ordii ENSDORG00000012888 I
GG12710 Drosophila erecta FBgn0104997 I
GH24925 Drosophila grimshawi FBgn0132380 I
Atf3 Drosophila melanogaster FBgn0028550 D
GI21781 Drosophila mojavensis FBgn0144511 I
GL14394 Drosophila persimilis FBgn0151999 I
GA10981 Drosophila pseudoobscura FBgn0071037 I
GJ16954 Drosophila virilis FBgn0204132 I
GK19912 Drosophila willistoni FBgn0221909 I
GE16537 Drosophila yakuba FBgn0234052 I
ATF3 Echinops telfairi ENSETEG00000015701 I
ATF3 Equus caballus ENSECAG00000011486 I
JDP2 Equus caballus ENSECAG00000014862 I
ATF3 Erinaceus europaeus ENSEEUG00000010993 I
JDP2 Felis catus ENSFCAG00000029464 I
ATF3 Felis catus ENSFCAG00000029636 I
ENSFALG00000006358 Ficedula albicollis ENSFALG00000006358 I
ENSFALG00000012408 Ficedula albicollis ENSFALG00000012408 I
ENSGMOG00000011063 Gadus morhua ENSGMOG00000011063 I
ENSGMOG00000015382 Gadus morhua ENSGMOG00000015382 I
ENSGMOG00000016268 Gadus morhua ENSGMOG00000016268 I
JDP2 Gallus gallus ENSGALG00000010322 I
ATF3 Gallus gallus ENSGALG00000025887 I
jdp2a Gasterosteus aculeatus ENSGACG00000007611 I
jdp2b Gasterosteus aculeatus ENSGACG00000010513 I
atf3 Gasterosteus aculeatus ENSGACG00000011997 I
Gfo_R010939 Geospiza fortis Gfo_R010939 I
Gfo_R012906 Geospiza fortis Gfo_R012906 I
JDP2 Gorilla gorilla ENSGGOG00000010752 I
ATF3 Gorilla gorilla ENSGGOG00000014206 I
Hsal_14793--XP_392513.1_APIME Harpegnathos saltator Hsal_14793--XP_392513.1_APIME I
HMEL006570 Heliconius melpomene HMEL006570 I
JDP2 Homo sapiens ENSG00000140044 D
ATF3 Homo sapiens ENSG00000162772 D
ENSSTOG00000007121 Ictidomys tridecemlineatus ENSSTOG00000007121 I
ENSSTOG00000026831 Ictidomys tridecemlineatus ENSSTOG00000026831 I
ISCW023105 Ixodes scapularis ISCW023105 I
ENSLACG00000001315 Latimeria chalumnae ENSLACG00000001315 I
ENSLACG00000018083 Latimeria chalumnae ENSLACG00000018083 I
ENSLOCG00000000814 Lepisosteus oculatus ENSLOCG00000000814 I
ENSLOCG00000010526 Lepisosteus oculatus ENSLOCG00000010526 I
LDEC018714 Leptinotarsa decemlineata LDEC018714 I
JDP2 Loxodonta africana ENSLAFG00000025757 I
ATF3 Loxodonta africana ENSLAFG00000032487 I
LCUP009590 Lucilia cuprina LCUP009590 I
ENSMMUP00000003747 Macaca fascicularis ENSMMUP00000003747 I
ENSP00000355954 Macaca fascicularis ENSP00000355954 I
ATF3 Macaca mulatta ENSMMUG00000012185 I
ENSMEUG00000007708 Macropus eugenii ENSMEUG00000007708 I
ENSMEUG00000010422 Macropus eugenii ENSMEUG00000010422 I
ENSMEUG00000011212 Macropus eugenii ENSMEUG00000011212 I
ATF3 Meleagris gallopavo ENSMGAG00000009708 I
JDP2 Meleagris gallopavo ENSMGAG00000012755 I
MCINX010628 Melitaea cinxia MCINX010628 I
ENSMICG00000016031 Microcebus murinus ENSMICG00000016031 I
ATF3 Monodelphis domestica ENSMODG00000003042 I
JDP2 Monodelphis domestica ENSMODG00000005909 I
MDOA009377 Musca domestica MDOA009377 I
ENSMPUG00000009147 Mustela putorius furo ENSMPUG00000009147 I
ENSMPUG00000015864 Mustela putorius furo ENSMPUG00000015864 I
Atf3 Mus musculus ENSMUSG00000026628 D
Jdp2 Mus musculus ENSMUSG00000034271 D
Myotis_brandtii_Atf3_10018256 Myotis brandtii Myotis_brandtii_Atf3_10018256 I
Myotis_brandtii_JDP2_10012947 Myotis brandtii Myotis_brandtii_JDP2_10012947 I
ENSMLUG00000002256 Myotis lucifugus ENSMLUG00000002256 I
ATF3 Myotis lucifugus ENSMLUG00000015048 I
NV16727 Nasonia vitripennis NV16727 I
ENSNLEG00000002916 Nomascus leucogenys ENSNLEG00000002916 I
ENSNLEG00000016475 Nomascus leucogenys ENSNLEG00000016475 I
JDP2 Ochotona princeps ENSOPRG00000012032 I
ATF3 Ochotona princeps ENSOPRG00000013252 I
Ogr08030 Ophisaurus gracilis Ogr08030 I
Ogr11165 Ophisaurus gracilis Ogr11165 I
ENSONIG00000015268 Oreochromis niloticus ENSONIG00000015268 I
ENSONIG00000018687 Oreochromis niloticus ENSONIG00000018687 I
ENSONIG00000020186 Oreochromis niloticus ENSONIG00000020186 I
ATF3 Ornithorhynchus anatinus ENSOANG00000008502 I
JDP2 Oryctolagus cuniculus ENSOCUG00000008466 I
ATF3 Oryctolagus cuniculus ENSOCUG00000017424 I
jdp2a Oryzias latipes ENSORLG00000016515 I
jdp2b Oryzias latipes ENSORLG00000017506 I
atf3 Oryzias latipes ENSORLG00000019980 I
ATF3 Otolemur garnettii ENSOGAG00000005803 I
JDP2 Otolemur garnettii ENSOGAG00000024796 I
ENSOARG00000001796 Ovis aries ENSOARG00000001796 I
ENSOARG00000010493 Ovis aries ENSOARG00000010493 I
ATF3 Pan troglodytes ENSPTRG00000001962 I
JDP2 Pan troglodytes ENSPTRG00000006555 I
ENSPANG00000019986 Papio anubis ENSPANG00000019986 I
ENSPANG00000021687 Papio anubis ENSPANG00000021687 I
PHUM288370 Pediculus humanus PHUM288370 I
ENSPSIG00000017647 Pelodiscus sinensis ENSPSIG00000017647 I
ENSPSIG00000017967 Pelodiscus sinensis ENSPSIG00000017967 I
ENSPMAG00000000427 Petromyzon marinus ENSPMAG00000000427 I
ENSPMAG00000006157 Petromyzon marinus ENSPMAG00000006157 I
ENSPFOG00000007886 Poecilia formosa ENSPFOG00000007886 I
ENSPFOG00000007903 Poecilia formosa ENSPFOG00000007903 I
ENSPFOG00000015014 Poecilia formosa ENSPFOG00000015014 I
ENSPFOG00000017099 Poecilia formosa ENSPFOG00000017099 I
Pvit_01216 Pogona vitticeps Pvit_01216 I
Pvit_13387 Pogona vitticeps Pvit_13387 I
ENSPPYG00000000235 Pongo abelii ENSPPYG00000000235 I
ENSPPYG00000006004 Pongo abelii ENSPPYG00000006004 I
JDP2 Pteropus vampyrus ENSPVAG00000000672 I
ATF3 Pteropus vampyrus ENSPVAG00000011826 I
Atf3 Rattus norvegicus ENSRNOG00000003745 I
Jdp2 Rattus norvegicus ENSRNOG00000008224 D
RPRC001561 Rhodnius prolixus RPRC001561 I
ENSSHAG00000002406 Sarcophilus harrisii ENSSHAG00000002406 I
ENSSHAG00000010413 Sarcophilus harrisii ENSSHAG00000010413 I
ENSSHAG00000017391 Sarcophilus harrisii ENSSHAG00000017391 I
SINV20083 Solenopsis invicta SINV20083 I
ATF3 Sus scrofa ENSSSCG00000015595 I
ATF3 Taeniopygia guttata ENSTGUG00000003050 I
JDP2 Taeniopygia guttata ENSTGUG00000012219 I
jdp2b Takifugu rubripes ENSTRUG00000010344 I
atf3 Takifugu rubripes ENSTRUG00000015975 I
jdp2a Takifugu rubripes ENSTRUG00000018323 I
ENSTSYG00000010193 Tarsius syrichta ENSTSYG00000010193 I
atf3 Tetraodon nigroviridis ENSTNIG00000002524 I
ENSTNIG00000016355 Tetraodon nigroviridis ENSTNIG00000016355 I
jdp2a Tetraodon nigroviridis ENSTNIG00000017406 I
TC008201 Tribolium castaneum TC008201 I
ATF3 Tupaia belangeri ENSTBEG00000002717 I
ENSTBEG00000014483 Tupaia belangeri ENSTBEG00000014483 I
ATF3 Tursiops truncatus ENSTTRG00000013897 I
Tal_R002996 Tyto alba Tal_R002996 I
ENSVPAG00000003090 Vicugna pacos ENSVPAG00000003090 I
ATF3 Vicugna pacos ENSVPAG00000011563 I
atf3.L Xenopus laevis XB-GENE-6085256 I
atf3 Xenopus tropicalis XB-GENE-6085251 I
ENSXMAG00000004013 Xiphophorus maculatus ENSXMAG00000004013 I
ENSXMAG00000004443 Xiphophorus maculatus ENSXMAG00000004443 I
ENSXMAG00000014805 Xiphophorus maculatus ENSXMAG00000014805 I
L798_12793 Zootermopsis nevadensis L798_12793 I