Sakowv30011013m.g (Saccoglossus kowalevskii)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) Sakowv30011013m.g T174846_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.789 0.789
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.783 0.783
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.783 0.783
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.783 0.783
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.759 0.759
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.759 0.759
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.729 0.729
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23947976_peptide EBF1 14 179
23947977_peptide EBF1 14 179

Links

Other EBF1 family TFs
Other Saccoglossus kowalevskii TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ab00925 Panicum virgatum Pavir.Ab00925 N 0.000
Pavir.Ba03191 Panicum virgatum Pavir.Ba03191 N 0.000
Pavir.Cb01092 Panicum virgatum Pavir.Cb01092 N 0.000
Pavir.Da01665 Panicum virgatum Pavir.Da01665 N 0.000
Pavir.Ea01546 Panicum virgatum Pavir.Ea01546 N 0.000
Pavir.Ea01890 Panicum virgatum Pavir.Ea01890 N 0.000
Pavir.Eb02394 Panicum virgatum Pavir.Eb02394 N 0.000
Pavir.Hb01564 Panicum virgatum Pavir.Hb01564 N 0.000
Pavir.Ib01630 Panicum virgatum Pavir.Ib01630 N 0.000
Pavir.J30092 Panicum virgatum Pavir.J30092 N 0.000
Pavir.J35119 Panicum virgatum Pavir.J35119 N 0.000
Pavir.J35278 Panicum virgatum Pavir.J35278 N 0.000
Traes_5BL_FC8AB1380 Triticum aestivum Traes_5BL_FC8AB1380 N 0.000