Gorai.004G227800 (Gossypium raimondii)
EIN3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04873 (EIN3) IPR006957 Gorai.004G227800 T175358_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9ZWK1_TOBAC
M10470_2.00 		Nicotiana tabacum
AGRTWCAT
ATGWAYCT		 Transfac
Matys et al.(2006)
P$TEIL_01 		0.919 0.919
EIN3
M00725_2.00 		Arabidopsis thaliana
NNRTDHAYNN
NNRTDHAYNN		 PBM
Chang et al.(2013)
pTH8729 		0.911 0.911
EIN3
M06878_2.00 		Arabidopsis thaliana
GDMYANRTWCAWTGH
DCAWTGWAYNTRKHC		 Dap-seq
OMalley et al.(2016)
EIN3_col_a 		0.911 0.911
EIN3
M06879_2.00 		Arabidopsis thaliana
RCCGTTR
YAACGGY		 Dap-seq
OMalley et al.(2016)
EIN3_colamp_a 		0.911 0.911
EIL1
M00724_2.00 		Arabidopsis thaliana
NNVRTDMRN
NYKHAYBNN		 PBM
Chang et al.(2013)
pTH7932 		0.894 0.894
e_gw1.87.73.1
M00726_2.00 		Physcomitrella patens
NNNRTDCDBN
NVHGHAYNNN		 PBM
Chang et al.(2013)
pTH8479 		0.850 0.850
EIL3
M00723_2.00 		Arabidopsis thaliana
NAGRTWCATNN
NNATGWAYCTN		 PBM
Chang et al.(2013)
pTH7933 		0.707 0.707
EIL3
M06877_2.00 		Arabidopsis thaliana
NYGTCYAGRTWCAWDNWHNHH
DDNDWNHWTGWAYCTRGACRN		 Dap-seq
OMalley et al.(2016)
EIL3_col_b 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G227800.1 EIN3 48 295
Gorai.004G227800.2 EIN3 48 295

Links

Other EIN3 family TFs
Other Gossypium raimondii TFs

181 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_28545 Aegilops tauschii F775_28545 I 0.797
AMTR_s00022p00216890 Amborella trichopoda AMTR_s00022p00216890 I 0.731
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I 0.855
Aquca_014_00938 Aquilegia coerulea Aquca_014_00938 I 0.894
EIN3 Arabidopsis lyrata fgenesh2_kg.3__2304__AT3G20770.1 I 0.911
EIL1 Arabidopsis lyrata fgenesh2_kg.4__646__AT2G27050.1 I 0.895
EIL3 Arabidopsis lyrata scaffold_202309.1 I 0.703
EIL3 Arabidopsis thaliana AT1G73730 D 0.707
EIL1 Arabidopsis thaliana AT2G27050 D 0.891
EIN3 Arabidopsis thaliana AT3G20770 D 0.911
Bostr.19424s0573 Boechera stricta Bostr.19424s0573 I 0.911
Bostr.29505s0037 Boechera stricta Bostr.29505s0037 I 0.878
Bostr.3288s0016 Boechera stricta Bostr.3288s0016 I 0.707
BRADI1G63780 Brachypodium distachyon BRADI1G63780 I 0.809
Bo1g108650 Brassica oleracea Bo1g108650 I 0.857
Bo3g041690 Brassica oleracea Bo3g041690 I 0.871
Bo3g076180 Brassica oleracea Bo3g076180 I 0.850
Bo5g106280 Brassica oleracea Bo5g106280 I 0.895
Bo6g087550 Brassica oleracea Bo6g087550 I 0.705
Bo6g118030 Brassica oleracea Bo6g118030 I 0.703
Bra000528 Brassica rapa Bra000528 I 0.879
Bra001802 Brassica rapa Bra001802 I 0.843
PK01239.1 Cannabis sativa PK01239.1 I 0.886
PK13351.1 Cannabis sativa PK13351.1 I 0.886
PK19114.1 Cannabis sativa PK19114.1 I 0.704
Cagra.0876s0005 Capsella grandiflora Cagra.0876s0005 I 0.707
Cagra.2243s0007 Capsella grandiflora Cagra.2243s0007 I 0.911
Cagra.6016s0001 Capsella grandiflora Cagra.6016s0001 I 0.883
Carubv10013213m.g Capsella rubella Carubv10013213m.g I 0.911
Carubv10020043m.g Capsella rubella Carubv10020043m.g I 0.707
Carubv10022879m.g Capsella rubella Carubv10022879m.g I 0.883
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I 0.935
evm.TU.supercontig_54.30 Carica papaya evm.TU.supercontig_54.30 I 0.821
Ca_02669 Cicer arietinum Ca_02669 I 0.704
Ca_07534 Cicer arietinum Ca_07534 I 0.931
Ca_10236 Cicer arietinum Ca_10236 I 0.943
Ciclev10000608m.g Citrus clementina Ciclev10000608m.g I 0.874
Ciclev10000617m.g Citrus clementina Ciclev10000617m.g I 0.894
Ciclev10014617m.g Citrus clementina Ciclev10014617m.g I 0.935
Ciclev10015261m.g Citrus clementina Ciclev10015261m.g I 0.709
orange1.1g007017m.g Citrus sinensis orange1.1g007017m.g I 0.935
orange1.1g007174m.g Citrus sinensis orange1.1g007174m.g I 0.894
orange1.1g007662m.g Citrus sinensis orange1.1g007662m.g I 0.709
orange1.1g009144m.g Citrus sinensis orange1.1g009144m.g I 0.874
Cucsa.142750 Cucumis sativus Cucsa.142750 I 0.939
Cucsa.143220 Cucumis sativus Cucsa.143220 I 0.707
Cucsa.364340 Cucumis sativus Cucsa.364340 I 0.874
Eucgr.B03664 Eucalyptus grandis Eucgr.B03664 I 0.713
Eucgr.G02632 Eucalyptus grandis Eucgr.G02632 I 0.874
Eucgr.J00631 Eucalyptus grandis Eucgr.J00631 I 0.955
Thhalv10001938m.g Eutrema salsugineum Thhalv10001938m.g I 0.898
Thhalv10018327m.g Eutrema salsugineum Thhalv10018327m.g I 0.703
Thhalv10020292m.g Eutrema salsugineum Thhalv10020292m.g I 0.915
gene00379-v1.0-hybrid Fragaria vesca gene00379-v1.0-hybrid I 0.858
gene00392-v1.0-hybrid Fragaria vesca gene00392-v1.0-hybrid I 0.822
gene20650-v1.0-hybrid Fragaria vesca gene20650-v1.0-hybrid I 0.709
gene25474-v1.0-hybrid Fragaria vesca gene25474-v1.0-hybrid I 0.919
GLYMA02G44220 Glycine max GLYMA02G44220 I 0.927
GLYMA13G03660 Glycine max GLYMA13G03660 I 0.931
GLYMA13G03700 Glycine max GLYMA13G03700 I 0.943
GLYMA13G41751 Glycine max GLYMA13G41751 I 0.725
GLYMA14G04550 Glycine max GLYMA14G04550 I 0.939
GLYMA15G03650 Glycine max GLYMA15G03650 I 0.717
GLYMA20G12250 Glycine max GLYMA20G12250 I 0.943
Gorai.003G140600 Gossypium raimondii Gorai.003G140600 I 0.943
Gorai.004G035300 Gossypium raimondii Gorai.004G035300 I 0.894
Gorai.009G071400 Gossypium raimondii Gorai.009G071400 I 0.704
Gorai.009G105400 Gossypium raimondii Gorai.009G105400 I 0.959
Gorai.013G266300 Gossypium raimondii Gorai.013G266300 I 0.935
MLOC_14619 Hordeum vulgare MLOC_14619 I 0.797
LPERR03G13760 Leersia perrieri LPERR03G13760 I 0.825
LPERR07G23570 Leersia perrieri LPERR07G23570 I 0.736
Lus10031245.g Linum usitatissimum Lus10031245.g I 0.700
Lus10031817.g Linum usitatissimum Lus10031817.g I 0.707
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I 0.939
chr3.LjB09K03.50.nc Lotus japonicus chr3.LjB09K03.50.nc I 0.704
LjSGA_067101.1 Lotus japonicus LjSGA_067101.1 I 0.932
MDP0000202831 Malus domestica MDP0000202831 I 0.890
MDP0000212881 Malus domestica MDP0000212881 I 0.882
MDP0000306498 Malus domestica MDP0000306498 I 0.882
MDP0000490180 Malus domestica MDP0000490180 I 0.700
MDP0000562585 Malus domestica MDP0000562585 I 0.703
MDP0000564884 Malus domestica MDP0000564884 I 0.882
MDP0000565880 Malus domestica MDP0000565880 I 0.703
cassava2120.valid.m1 Manihot esculenta cassava2120.valid.m1 I 0.704
cassava3620.m1 Manihot esculenta cassava3620.m1 I 0.967
MTR_2g098470 Medicago truncatula MTR_2g098470 I 0.724
MTR_3g078770 Medicago truncatula MTR_3g078770 I 0.911
MTR_5g087790 Medicago truncatula MTR_5g087790 I 0.935
mgf012394m Mimulus guttatus mgf012394m I 0.825
mgf015996m Mimulus guttatus mgf015996m I 0.873
mgf018950m Mimulus guttatus mgf018950m I 0.865
mgf020935m Mimulus guttatus mgf020935m I 0.709
GSMUA_Achr10G12800_001 Musa acuminata GSMUA_Achr10G12800_001 I 0.837
GSMUA_Achr11G25120_001 Musa acuminata GSMUA_Achr11G25120_001 I 0.757
GSMUA_Achr2G11540_001 Musa acuminata GSMUA_Achr2G11540_001 I 0.806
GSMUA_Achr3G09440_001 Musa acuminata GSMUA_Achr3G09440_001 I 0.747
GSMUA_Achr5G27670_001 Musa acuminata GSMUA_Achr5G27670_001 I 0.833
GSMUA_Achr6G15930_001 Musa acuminata GSMUA_Achr6G15930_001 I 0.823
GSMUA_Achr8G21550_001 Musa acuminata GSMUA_Achr8G21550_001 I 0.810
GSMUA_Achr9G17080_001 Musa acuminata GSMUA_Achr9G17080_001 I 0.781
Q9ZWK1_TOBAC Nicotiana tabacum Q9ZWK1_TOBAC D 0.915
OBART07G26760 Oryza barthii OBART07G26760 I 0.757
ORGLA03G0150600 Oryza glaberrima ORGLA03G0150600 I 0.805
ORGLA07G0211700 Oryza glaberrima ORGLA07G0211700 I 0.776
OGLUM03G15860 Oryza glumaepatula OGLUM03G15860 I 0.805
BGIOSGA012535 Oryza indica BGIOSGA012535 I 0.805
BGIOSGA023694 Oryza indica BGIOSGA023694 I 0.776
OLONG_004360 Oryza longistaminata OLONG_004360 I 0.733
OMERI03G14140 Oryza meridionalis OMERI03G14140 I 0.805
OMERI05G02190 Oryza meridionalis OMERI05G02190 I 0.727
OMERI07G23380 Oryza meridionalis OMERI07G23380 I 0.761
ONIVA03G16680 Oryza nivara ONIVA03G16680 I 0.805
ONIVA07G26490 Oryza nivara ONIVA07G26490 I 0.776
OPUNC03G15240 Oryza punctata OPUNC03G15240 I 0.805
OPUNC07G25150 Oryza punctata OPUNC07G25150 I 0.761
ORUFI03G16290 Oryza rufipogon ORUFI03G16290 I 0.805
ORUFI07G27710 Oryza rufipogon ORUFI07G27710 I 0.776
OS03G0324200 Oryza sativa OS03G0324200 I 0.805
OS03G0324300 Oryza sativa OS03G0324300 I 0.805
OS07G0685700 Oryza sativa OS07G0685700 I 0.776
Pavir.Bb03705 Panicum virgatum Pavir.Bb03705 I 0.721
Pavir.Ia03450 Panicum virgatum Pavir.Ia03450 I 0.797
Pavir.Ib01512 Panicum virgatum Pavir.Ib01512 I 0.805
Pavir.J01001 Panicum virgatum Pavir.J01001 I 0.744
PDK_20s1443543g001 Phoenix dactylifera PDK_20s1443543g001 I 0.786
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I 0.841
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D 0.850
POPTR_0001s05360 Populus trichocarpa POPTR_0001s05360 I 0.709
POPTR_0003s22090 Populus trichocarpa POPTR_0003s22090 I 0.703
POPTR_0004s20830 Populus trichocarpa POPTR_0004s20830 I 0.947
POPTR_0008s01200 Populus trichocarpa POPTR_0008s01200 I 0.878
POPTR_0009s16080 Populus trichocarpa POPTR_0009s16080 I 0.947
POPTR_0010s25370 Populus trichocarpa POPTR_0010s25370 I 0.882
Pm017009 Prunus mume Pm017009 I 0.898
Pm028171 Prunus mume Pm028171 I 0.703
PRUPE_ppa003113mg Prunus persica PRUPE_ppa003113mg I 0.707
PRUPE_ppa003493mg Prunus persica PRUPE_ppa003493mg I 0.848
PRUPE_ppa003550mg Prunus persica PRUPE_ppa003550mg I 0.878
29708.m000185 Ricinus communis 29708.m000185 I 0.959
30169.m006395 Ricinus communis 30169.m006395 I 0.715
SapurV1A.0009s0320 Salix purpurea SapurV1A.0009s0320 I 0.700
SapurV1A.0036s0870 Salix purpurea SapurV1A.0036s0870 I 0.874
SapurV1A.0070s0670 Salix purpurea SapurV1A.0070s0670 I 0.878
SapurV1A.0561s0140 Salix purpurea SapurV1A.0561s0140 I 0.947
SapurV1A.0615s0150 Salix purpurea SapurV1A.0615s0150 I 0.951
SELMODRAFT_112063 Selaginella moellendorffii SELMODRAFT_112063 I 0.793
SELMODRAFT_136229 Selaginella moellendorffii SELMODRAFT_136229 I 0.793
SELMODRAFT_16064 Selaginella moellendorffii SELMODRAFT_16064 I 0.724
SELMODRAFT_16065 Selaginella moellendorffii SELMODRAFT_16065 I 0.724
SELMODRAFT_419770 Selaginella moellendorffii SELMODRAFT_419770 I 0.810
SELMODRAFT_449238 Selaginella moellendorffii SELMODRAFT_449238 I 0.794
Si029213m.g Setaria italica Si029213m.g I 0.737
Si034616m.g Setaria italica Si034616m.g I 0.789
Solyc01g009170.2 Solanum lycopersicum Solyc01g009170.2 I 0.923
Solyc01g014480.2 Solanum lycopersicum Solyc01g014480.2 I 0.704
Solyc01g096810.2 Solanum lycopersicum Solyc01g096810.2 I 0.866
Solyc06g073720.1 Solanum lycopersicum Solyc06g073720.1 I 0.898
Solyc06g073730.1 Solanum lycopersicum Solyc06g073730.1 I 0.886
PGSC0003DMG400005914 Solanum tuberosum PGSC0003DMG400005914 I 0.878
PGSC0003DMG400005915 Solanum tuberosum PGSC0003DMG400005915 I 0.894
PGSC0003DMG400008712 Solanum tuberosum PGSC0003DMG400008712 I 0.923
PGSC0003DMG400027507 Solanum tuberosum PGSC0003DMG400027507 I 0.870
PGSC0003DMG400029908 Solanum tuberosum PGSC0003DMG400029908 I 0.709
Sb01g036740 Sorghum bicolor Sb01g036740 I 0.797
Sb02g043350 Sorghum bicolor Sb02g043350 I 0.724
TCM_040510 Theobroma cacao TCM_040510 I 0.707
TCM_042022 Theobroma cacao TCM_042022 I 0.963
Traes_2BS_647C82888 Triticum aestivum Traes_2BS_647C82888 I 0.717
Traes_4AS_2BDA1260C Triticum aestivum Traes_4AS_2BDA1260C I 0.797
Traes_4BL_F34EBD618 Triticum aestivum Traes_4BL_F34EBD618 I 0.847
Traes_4DL_C083C804E Triticum aestivum Traes_4DL_C083C804E I 0.793
Traes_5DL_62DEF8361 Triticum aestivum Traes_5DL_62DEF8361 I 0.727
EIL3 Vitis vinifera VIT_06s0004g01610 I 0.720
VIT_06s0009g01380 Vitis vinifera VIT_06s0009g01380 I 0.878
VIT_13s0047g00250 Vitis vinifera VIT_13s0047g00250 I 0.906
GRMZM2G003558 Zea mays GRMZM2G003558 I 0.745
GRMZM2G033570 Zea mays GRMZM2G033570 I 0.793
GRMZM2G151811 Zea mays GRMZM2G151811 I 0.749
GRMZM2G317584 Zea mays GRMZM2G317584 I 0.789