CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CLEC001132
(
Cimex lectularius
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00250 (Forkhead)
IPR001766
CLEC001132
T189507_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
fkh
M03734_2.00
Drosophila melanogaster
WRWGYMAATATTKRCWYW
WRWGYMAATATTKRCWYW
SELEX
Nitta et al.(2015)
fkh_1
0.855
0.942
fkh
M03735_2.00
Drosophila melanogaster
HWASAATAAYAWT
AATRTTATTSTWD
SELEX
Nitta et al.(2015)
fkh_2
0.855
0.942
fkh
M06473_2.00
Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN
B1H
Mathelier et al.(2014)
MA0446.1
0.855
0.942
fkh
M06194_2.00
Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN
B1H
Zhu et al.(2011)
fkh_NAR_FBgn0000659
0.855
0.942
fkh
M08200_2.00
Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN
ChIP-seq
Contrino et al.(2012)
Mf15
0.855
0.942
fkh
M09668_2.00
Drosophila melanogaster
TRTTTRCAHAAG
CTTDTGYAAAYA
Misc
Kulakovskiy et al.(2009)
fkh
0.855
0.942
FOXA1
M04817_2.00
Homo sapiens
NTRTKTACMYWN
NWRKGTAMAYAN
SELEX
Yin et al.(2017)
FOXA1_eDBD_HT-SELEX
0.850
0.907
FOXA1
M04819_2.00
Homo sapiens
BVYTAWGTAAACAAWN
NWTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_1
0.850
0.907
FOXA1
M04820_2.00
Homo sapiens
HWRWRYAAATATTKACWYWR
YWRWGTMAATATTTRYWYWD
SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_2
0.850
0.907
FOXA1
M08117_2.00
Homo sapiens
NNNNTRTTTACWYWD
HWRWGTAAAYANNNN
ChIP-seq
Mathelier et al.(2014)
MA0148.3
0.850
0.907
FOXA1
M07960_2.00
Homo sapiens
NNYWRWGYAAACANN
NNTGTTTRCWYWRNN
ChIP-seq
Gerstein et al.(2012)
ECC-1_FOXA1_HudsonAlpha
0.850
0.907
FOXA1
M07961_2.00
Homo sapiens
HWRWGTAAAYA
TRTTTACWYWD
ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA1_HudsonAlpha
0.850
0.907
FOXA1
M07962_2.00
Homo sapiens
NWVWGTAAACA
TGTTTACWBWN
ChIP-seq
Gerstein et al.(2012)
T-47D_FOXA1_HudsonAlpha
0.850
0.907
FOXA1
M08199_2.00
Homo sapiens
BWRDGTAAACANN
NNTGTTTACHYWV
ChIP-seq
Contrino et al.(2012)
Mv69
0.850
0.907
FOXA1
M08028_2.00
Homo sapiens
WRWRYAAAYA
TRTTTRYWYW
ChIP-seq
Chen et al.(2011)
GSE15244_FoxA1
0.850
0.907
FOXA1
M09090_2.00
Homo sapiens
VHWRWGTAAACA
TGTTTACWYWDB
Misc
Kulakovskiy et al.(2013)
FOXA1_HUMAN.H11MO.0.A
0.850
0.907
Foxa1
M09103_2.00
Mus musculus
TRTTKACWYW
WRWGTMAAYA
Misc
Kulakovskiy et al.(2013)
FOXA1_MOUSE.H11MO.0.A
0.850
0.907
FOXA1
M09544_2.00
Homo sapiens
WGCCAARRYAAAYANN
NNTRTTTRYYTTGGCW
Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_2
0.850
0.907
FOXA1
M09543_2.00
Homo sapiens
WRWGTAAACA
TGTTTACWYW
Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_1
0.850
0.907
FOXA1
M09545_2.00
Homo sapiens
WRWGTAAAYA
TRTTTACWYW
Misc
Heinz et al.(2010)
MCF7-FOXA1_GSE26831
0.850
0.907
FOXA1
M10542_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXA1_02
0.850
0.907
FOXA1
M10543_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXA1_03
0.850
0.907
FOXA1
M10544_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3A_01
0.850
0.907
FOXA1
M10545_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3ALPHA_Q6
0.850
0.907
FOXA1
M10546_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3A_Q6
0.850
0.907
FOXA1
M04818_2.00
Homo sapiens
NWRDGYMAAYAW
WTRTTKRCHYWN
SELEX
Yin et al.(2017)
FOXA1_eDBD_Methyl-HT-SELEX
0.850
0.907
FOXA1
M04821_2.00
Homo sapiens
BVYTAWGTAAACAAWV
BWTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_1
0.850
0.907
FOXA1
M04822_2.00
Homo sapiens
YTRWRYAAATATTTACWYAR
YTRWGTAAATATTTRYWYAR
SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_2
0.850
0.907
Foxa2
M00162_2.00
Mus musculus
GTAAAYAW
WTRTTTAC
PBM
Badis et al.(2009)
Foxa2_2830
0.849
0.930
FOXA2
M04815_2.00
Homo sapiens
NHVNRYMAATATTKACNNDN
NHNNGTMAATATTKRYNBDN
SELEX
Yin et al.(2017)
FOXA2_eDBD_HT-SELEX
0.849
0.930
Foxa2
M08121_2.00
Mus musculus
TRTTTACWYWDN
NHWRWGTAAAYA
ChIP-seq
Mathelier et al.(2014)
MA0047.2
0.849
0.930
FOXA2
M07959_2.00
Homo sapiens
NNWRWGYAAAYANNN
NNNTRTTTRCWYWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA2_HudsonAlpha
0.849
0.930
FOXA2
M09088_2.00
Homo sapiens
NHWRWGTAAACA
TGTTTACWYWDN
Misc
Kulakovskiy et al.(2013)
FOXA2_HUMAN.H11MO.0.A
0.849
0.930
Foxa2
M09104_2.00
Mus musculus
BNHTRTTKACWYW
WRWGTMAAYADNV
Misc
Kulakovskiy et al.(2013)
FOXA2_MOUSE.H11MO.0.A
0.849
0.930
FOXA2
M09542_2.00
Homo sapiens
WVWGTMAACANV
BNTGTTKACWBW
Misc
Heinz et al.(2010)
Liver-Foxa2_GSE25694
0.849
0.930
FOXA2
M10540_2.00
Homo sapiens
WAARYAAAYADKNMV
BKNMHTRTTTRYTTW
Transfac
Matys et al.(2006)
V$HNF3B_01
0.849
0.930
FOXA2
M10541_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3B_Q6
0.849
0.930
AAA20679
M10575_2.00
Xenopus laevis
WNWGTMAACAWWMW
WKWWTGTTKACWNW
Transfac
Matys et al.(2006)
V$XFD3_01
0.849
0.930
FOXA2
M04816_2.00
Homo sapiens
NWRNRYMAATATTKACWNWN
NWNWGTMAATATTKRYNYWN
SELEX
Yin et al.(2017)
FOXA2_eDBD_Methyl-HT-SELEX
0.849
0.930
Q2L6N7_PELSI
M01990_2.00
Trionyx sinensis
KTRTTTACA
TGTAAAYAM
PBM
Weirauch et al.(2014)
pTH5334
0.837
0.849
FOXA3
M04831_2.00
Homo sapiens
BVYTAWGTAAACAAAN
NTTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA3_FL_HT-SELEX_1
0.817
0.860
FOXA3
M04832_2.00
Homo sapiens
HWRWGYAAATATTKACWYWD
HWRWGTMAATATTTRCWYWD
SELEX
Yin et al.(2017)
FOXA3_FL_HT-SELEX_2
0.817
0.860
FOXA3
M09096_2.00
Homo sapiens
HWRWGTMAAYADN
NHTRTTKACWYWD
Misc
Kulakovskiy et al.(2013)
FOXA3_HUMAN.H11MO.0.B
0.817
0.860
Foxa3
M09106_2.00
Mus musculus
HWRWGTMAAYADN
NHTRTTKACWYWD
Misc
Kulakovskiy et al.(2013)
FOXA3_MOUSE.H11MO.0.A
0.817
0.860
FOXA3
M10557_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3G_Q4
0.817
0.860
FOXA3
M04833_2.00
Homo sapiens
CVYTAWGTAAACAAWB
VWTTGTTTACWTARBG
SELEX
Yin et al.(2017)
FOXA3_FL_Methyl-HT-SELEX_1
0.817
0.860
FOXA3
M04834_2.00
Homo sapiens
HWRWGYAAATATTKACWYWD
HWRWGTMAATATTTRCWYWD
SELEX
Yin et al.(2017)
FOXA3_FL_Methyl-HT-SELEX_2
0.817
0.860
pha-4
M08123_2.00
Caenorhabditis elegans
WRWGYAAAYA
TRTTTRCWYW
ChIP-seq
Mathelier et al.(2014)
MA0546.1
0.780
0.826
pha-4
M08201_2.00
Caenorhabditis elegans
GTAAACAR
YTGTTTAC
ChIP-seq
Contrino et al.(2012)
Mw164
0.780
0.826
pha-4
M09548_2.00
Caenorhabditis elegans
RYAMAYAN
NTRTKTRY
Misc
Heinz et al.(2010)
cElegans-Embryos-PHA4_modEncode
0.780
0.826
Foxb1
M01983_2.00
Mus musculus
TRTTKAYWYW
WRWRTMAAYA
PBM
Weirauch et al.(2014)
pTH2808
0.723
0.756
FOXB1
M03028_2.00
Homo sapiens
GAATGACACRGCKV
BMGCYGTGTCATTC
SELEX
Jolma et al.(2013)
FOXB1_1
0.723
0.756
FOXB1
M03029_2.00
Homo sapiens
WRWGTMAATATTKACWYW
WRWGTMAATATTKACWYW
SELEX
Jolma et al.(2013)
FOXB1_2
0.723
0.756
FOXB1
M03030_2.00
Homo sapiens
WTRTTKACWTW
WAWGTMAAYAW
SELEX
Jolma et al.(2013)
FOXB1_3
0.723
0.756
FOXB1
M03031_2.00
Homo sapiens
NTRTTTACW
WGTAAAYAN
SELEX
Jolma et al.(2013)
FOXB1_4
0.723
0.756
FOXB1
M04837_2.00
Homo sapiens
NWRDGYMAATATTKRCWYWD
HWRWGYMAATATTKRCHYWN
SELEX
Yin et al.(2017)
FOXB1_eDBD_HT-SELEX
0.723
0.756
FOXB1
M04838_2.00
Homo sapiens
NWRNGYMAATATTKRCDYWD
HWRHGYMAATATTKRCNYWN
SELEX
Yin et al.(2017)
FOXB1_eDBD_Methyl-HT-SELEX
0.723
0.756
fd96Ca
M03743_2.00
Drosophila melanogaster
WRWGYMAATATTKRCWYW
WRWGYMAATATTKRCWYW
SELEX
Nitta et al.(2015)
fd96Ca_1
0.715
0.698
fd64A
M06197_2.00
Drosophila melanogaster
KVWAAACA
TGTTTWBM
B1H
Zhu et al.(2011)
fd64A_SANGER_5_FBgn0004895
0.674
0.616
FOXC1
M00257_2.00
Homo sapiens
NNNVHHAAYA
TRTTDDBNNN
PBM
Barrera et al.(2016)
FOXC1_REF
0.665
0.756
Foxc2
M00796_2.00
Mus musculus
HNNRHMAAYA
TRTTKDYNND
PBM
Weirauch et al.(2013)
pTH3796
0.665
0.756
Foxc1
M01982_2.00
Mus musculus
HNNRHMAAYA
TRTTKDYNND
PBM
Weirauch et al.(2014)
pTH2673
0.665
0.756
FOXC1
M03013_2.00
Homo sapiens
AWRTAAAYAAAYA
TRTTTRTTTAYWT
SELEX
Jolma et al.(2013)
FOXC1_1
0.665
0.756
FOXC1
M03014_2.00
Homo sapiens
NRWMAATATTKWYN
NRWMAATATTKWYN
SELEX
Jolma et al.(2013)
FOXC1_2
0.665
0.756
FOXC1
M03015_2.00
Homo sapiens
WRWRTMAAYAW
WTRTTKAYWYW
SELEX
Jolma et al.(2013)
FOXC1_3
0.665
0.756
FOXC2
M03036_2.00
Homo sapiens
NRTMAATATTDWYN
NRWHAATATTKAYN
SELEX
Jolma et al.(2013)
FOXC2_1
0.665
0.756
FOXC2
M03037_2.00
Homo sapiens
RTAAAYAAACA
TGTTTRTTTAY
SELEX
Jolma et al.(2013)
FOXC2_2
0.665
0.756
FOXC2
M03038_2.00
Homo sapiens
WAHRTMAAYAWW
WWTRTTKAYDTW
SELEX
Jolma et al.(2013)
FOXC2_3
0.665
0.756
Foxc1
M03059_2.00
Mus musculus
RTAAAYAAACA
TGTTTRTTTAY
SELEX
Jolma et al.(2013)
Foxc1_1
0.665
0.756
Foxc1
M03060_2.00
Mus musculus
RTAAACA
TGTTTAY
SELEX
Jolma et al.(2013)
Foxc1_2
0.665
0.756
FOXC2
M04841_2.00
Homo sapiens
NHVNRYMAACAH
DTGTTKRYNBDN
SELEX
Yin et al.(2017)
FOXC2_eDBD_HT-SELEX_1
0.665
0.756
FOXC2
M04842_2.00
Homo sapiens
RHAMAYAAACAH
DTGTTTRTKTDY
SELEX
Yin et al.(2017)
FOXC2_eDBD_HT-SELEX_2
0.665
0.756
FOXC1
M09083_2.00
Homo sapiens
SBWAWRTAAACADHN
NDHTGTTTAYWTWVS
Misc
Kulakovskiy et al.(2013)
FOXC1_HUMAN.H11MO.0.C
0.665
0.756
Foxc1
M09111_2.00
Mus musculus
SBWAWRTAAACADHN
NDHTGTTTAYWTWVS
Misc
Kulakovskiy et al.(2013)
FOXC1_MOUSE.H11MO.0.C
0.665
0.756
FOXC2
M10559_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FKHL14_Q2
0.665
0.756
FOXC1
M10525_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXC1_Q4
0.665
0.756
FOXC1
M10526_2.00
Homo sapiens
TSTTTATTTACDBNVN
NBNVHGTAAATAAASA
Transfac
Matys et al.(2006)
V$FREAC3_01
0.665
0.756
FOXC2
M04843_2.00
Homo sapiens
NHNNRYMAACAN
NTGTTKRYNNDN
SELEX
Yin et al.(2017)
FOXC2_eDBD_Methyl-HT-SELEX_1
0.665
0.756
FOXC2
M04844_2.00
Homo sapiens
VHMMAYAAACAN
NTGTTTRTKKDB
SELEX
Yin et al.(2017)
FOXC2_eDBD_Methyl-HT-SELEX_2
0.665
0.756
FOXC1
M00253_2.00
Homo sapiens
NNHATAAWHAN
NTDWTTATDNN
PBM
Barrera et al.(2016)
FOXC1_F112S
0.665
0.744
FOXC1
M00255_2.00
Homo sapiens
NRTATATWHNNN
NNNDWATATAYN
PBM
Barrera et al.(2016)
FOXC1_L130F
0.665
0.744
FOXC1
M00256_2.00
Homo sapiens
NNNNWWTYAMAWN
NWTKTRAWWNNNN
PBM
Barrera et al.(2016)
FOXC1_P79L
0.665
0.744
FOXC1
M00258_2.00
Homo sapiens
NNNAMAAYANN
NNTRTTKTNNN
PBM
Barrera et al.(2016)
FOXC1_S131L
0.665
0.744
FOXC1
M00259_2.00
Homo sapiens
RTAAACAW
WTGTTTAY
PBM
Barrera et al.(2016)
FOXC1_S82T
0.665
0.744
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CLEC001132-PA
Forkhead
140
229
KPAYSYISLITMAIQNSPSKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHPDSGNMFENGCY
Links
Other
Forkhead
family TFs
Other
Cimex lectularius
TFs
686 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cob_08867
Colletotrichum orbiculare
Cob_08867
N
CCM_08320
Cordyceps militaris
CCM_08320
N
EPUS_01479
Endocarpon pusillum
EPUS_01479
N
X797_005891
Metarhizium robertsii
X797_005891
N