Sb03g034360 (Sorghum bicolor)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Sb03g034360 T195096_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.867 0.944
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.867 0.944
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.867 0.944
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.862 0.917
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.847 0.833
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.847 0.833
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.843 0.833
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.843 0.833
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.838 0.806
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.832 0.806
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.832 0.806
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.832 0.806
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.832 0.750
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.832 0.750
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.823 0.833
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.823 0.806
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.823 0.806
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.819 0.722
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb03g034360.1 GATA 287 322

Links

Other GATA family TFs
Other Sorghum bicolor TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARB_06946 Arthroderma benhamiae ARB_06946 I 0.000
MCYG_06710 Arthroderma otae MCYG_06710 I 0.000
fgenesh1_pg.00866_#_590 Aspergillus carbonarius fgenesh1_pg.00866_#_590 I 0.000
ACLA_002460 Aspergillus clavatus CADACLAG00000308 I 0.000
CADAFLAG00010556 Aspergillus flavus CADAFLAG00010556 I 0.000
AFUA_5G02690 Aspergillus fumigatus CADAFUAG00002913 I 0.000
ANIA_08125 Aspergillus nidulans CADANIAG00004158 D 0.000
CADANGAG00002516 Aspergillus niger CADANGAG00002516 I 0.000
CADAORAG00009712 Aspergillus oryzae CADAORAG00009712 I 0.000
EURHEDRAFT_520686 Aspergillus ruber EURHEDRAFT_520686 I 0.000
ATEG_09236 Aspergillus terreus CADATEAG00001412 I 0.000
BDDG_08856 Blastomyces dermatitidis BDDG_08856 I 0.000
PVAR5_0633 Byssochlamys spectabilis PVAR5_0633 I 0.000
A1O1_01819 Capronia coronata A1O1_01819 I 0.000
A1O3_00396 Capronia epimyces A1O3_00396 I 0.000
PV04_04557 Capronia semiimmersa PV04_04557 I 0.000
Z519_08384 Cladophialophora bantiana Z519_08384 I 0.000
G647_03978 Cladophialophora carrionii G647_03978 I 0.000
PV07_05656 Cladophialophora immunda PV07_05656 I 0.000
A1O5_01110 Cladophialophora psammophila A1O5_01110 I 0.000
A1O7_04704 Cladophialophora yegresii A1O7_04704 I 0.000
CIMG_06468 Coccidioides immitis CIMG_06468 I 0.000
CPC735_029590 Coccidioides posadasii CPC735_029590 I 0.000
HMPREF1541_08621 Cyphellophora europaea HMPREF1541_08621 N 0.000
A1O9_01846 Exophiala aquamarina A1O9_01846 I 0.000
HMPREF1120_03270 Exophiala dermatitidis HMPREF1120_03270 I 0.000
PV10_03900 Exophiala mesophila PV10_03900 I 0.000
PV06_06348 Exophiala oligosperma PV06_06348 I 0.000
PV11_01791 Exophiala sideris PV11_01791 I 0.000
PV05_02224 Exophiala xenobiotica PV05_02224 I 0.000
Z517_06543 Fonsecaea pedrosoi Z517_06543 I 0.000
HCBG_06419 Histoplasma capsulatum HCBG_06419 I 0.000
MCYG_06710 Microsporum canis MCYG_06710 I 0.000
MGYG_03929 Microsporum gypseum MGYG_03929 I 0.000
NFIA_039400 Neosartorya fischeri CADNFIAG00003283 I 0.000
PABG_05434 Paracoccidioides brasiliensis PABG_05434 I 0.000
PAAG_12364 Paracoccidioides sp lutzii PAAG_12364 I 0.000
Pc21g15300 Penicillium chrysogenum Pc21g15300 I 0.000
PDIP_48430 Penicillium digitatum PDIP_48430 I 0.000
PEX1_053360 Penicillium expansum PEX1_053360 I 0.000
PITC_049470 Penicillium italicum PITC_049470 I 0.000
PMAA_080950 Penicillium marneffei PMAA_080950 I 0.000
PDE_09881 Penicillium oxalicum PDE_09881 I 0.000
PCH_Pc21g15300 Penicillium rubens PCH_Pc21g15300 I 0.000
U727_00430462281 Penicillium solitum U727_00430462281 I 0.000
Z518_00867 Rhinocladiella mackenziei Z518_00867 I 0.000
PMAA_080950 Talaromyces marneffei PMAA_080950 I 0.000
TSTA_115520 Talaromyces stipitatus TSTA_115520 I 0.000
TEQG_04271 Trichophyton equinum TEQG_04271 I 0.000
H101_02186 Trichophyton interdigitale H101_02186 I 0.000
H102_04486 Trichophyton rubrum H102_04486 I 0.000
H105_04510 Trichophyton soudanense H105_04510 I 0.000
TESG_00349 Trichophyton tonsurans TESG_00349 I 0.000
TRV_05915 Trichophyton verrucosum TRV_05915 I 0.000
UREG_03950 Uncinocarpus reesii UREG_03950 I 0.000