CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Solyc03g033660.2 *(Solanum lycopersicum)* GATA
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00320 (GATA)	IPR000679	Solyc03g033660.2	T195298_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
GATA3 M02003_2.00	Arabidopsis thaliana	NNNNGATBNN	NNVATCNNNN	PBM Weirauch et al.(2014) pTH7657	0.847	0.833
GATA9 M02002_2.00	Arabidopsis thaliana	NHAGATCTDNN	NNHAGATCTDN	PBM Weirauch et al.(2014) pTH7378	0.844	0.806
GATA12 M00863_2.00	Arabidopsis thaliana	NNNGATBN	NVATCNNN	PBM Franco-Zorrilla et al.(2014) GATA12	0.844	0.806
GATA12 M06895_2.00	Arabidopsis thaliana	DWWYYAGATCYRR	YYRGATCTRRWWH	Dap-seq OMalley et al.(2016) GATA12_col_a	0.844	0.806
GATA12 M06896_2.00	Arabidopsis thaliana	YRGATCTRRWYYNDN	NHNRRWYYAGATCYR	Dap-seq OMalley et al.(2016) GATA12_colamp_a	0.844	0.806
GATA7 M02004_2.00	Arabidopsis thaliana	NNNNATNNNN	NNNNATNNNN	PBM Weirauch et al.(2014) pTH7658	0.837	0.917
GATA8 M02000_2.00	Arabidopsis thaliana	NNGATYYVN	NBRRATCNN	PBM Weirauch et al.(2014) pTH7665	0.834	0.806
GATA4 M00727_2.00	Arabidopsis thaliana	NNNGATCNNN	NNNGATCNNN	PBM Chang et al.(2013) pTH7196	0.833	0.778
GATA4 M06891_2.00	Arabidopsis thaliana	HNNYRGATCYRRWYY	RRWYYRGATCYRNND	Dap-seq OMalley et al.(2016) GATA4_col_a	0.833	0.778
GATA10 M01994_2.00	Arabidopsis thaliana	CAGATCTA	TAGATCTG	PBM Weirauch et al.(2014) pTH7615	0.832	0.750
GATA11 M01995_2.00	Arabidopsis thaliana	CAGATCTH	DAGATCTG	PBM Weirauch et al.(2014) pTH7486	0.832	0.750
GATA11 M06882_2.00	Arabidopsis thaliana	HYYAGATCYRRWWHH	DDWWYYRGATCTRRD	Dap-seq OMalley et al.(2016) GATA11_col_a	0.832	0.750
Q76DY3_TOBAC M10600_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGP1_01	0.830	0.778
GATA6 M01999_2.00	Arabidopsis thaliana	NVRATVNDNN	NNHNBATYBN	PBM Weirauch et al.(2014) pTH7317	0.823	0.861
GATA6 M06890_2.00	Arabidopsis thaliana	YAGATCTARAWNH	DNWTYTAGATCTR	Dap-seq OMalley et al.(2016) GATA6_col200_a	0.823	0.861
GATA1 M01998_2.00	Arabidopsis thaliana	NNNVATBNNN	NNNVATBNNN	PBM Weirauch et al.(2014) pTH8144	0.819	0.778
GATA1 M06887_2.00	Arabidopsis thaliana	RYGRTGRTGRTGRTG	CAYCAYCAYCAYCRY	Dap-seq OMalley et al.(2016) GATA1_col_a	0.819	0.778
GATA1 M06888_2.00	Arabidopsis thaliana	HNYAGATCYRRWYB	VRWYYRGATCTRND	Dap-seq OMalley et al.(2016) GATA1_colamp_a	0.819	0.778
For this family, TFs with SR scores > 0.802* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Solyc03g033660.2.1	GATA	214	249	CSHCGVHKTPQWRTGPMGAKTLCNACGVRFKSGRLL

Links
Other GATA family TFs
Other *Solanum lycopersicum* TFs

610 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BRADI2G54787	Brachypodium distachyon	BRADI2G54787	I	0.000
LPERR10G09060	Leersia perrieri	LPERR10G09060	N	0.000
OBART10G12450	Oryza barthii	OBART10G12450	N	0.000
OB10G19740	Oryza brachyantha	OB10G19740	N	0.000
ORGLA10G0110500	Oryza glaberrima	ORGLA10G0110500	N	0.000
OGLUM10G12240	Oryza glumaepatula	OGLUM10G12240	N	0.000
OLONG_012079	Oryza longistaminata	OLONG_012079	N	0.000
OMERI10G09420	Oryza meridionalis	OMERI10G09420	N	0.000
ONIVA10G11720	Oryza nivara	ONIVA10G11720	N	0.000
OPUNC10G10710	Oryza punctata	OPUNC10G10710	N	0.000
ORUFI10G13160	Oryza rufipogon	ORUFI10G13160	N	0.000
EHD1	Oryza sativa	OS10G0463400	N	0.000
Si039992m.g	Setaria italica	Si039992m.g	N	0.000
Sb01g019980	Sorghum bicolor	Sb01g019980	N	0.000
GRMZM2G379656	Zea mays	GRMZM2G379656	N	0.000

Solyc03g033660.2 (Solanum lycopersicum) GATA

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

610 Related TFs

Solyc03g033660.2 **(Solanum lycopersicum)
GATA**