Bostr.27991s0092 (Boechera stricta)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Bostr.27991s0092 T196399_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.867 1.000
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.867 1.000
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.848 0.889
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.837 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.832 0.750
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.823 0.806
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.823 0.806
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.823 0.806
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.823 0.806
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.823 0.806
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.823 0.806
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.819 0.806
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.819 0.806
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.819 0.778
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.819 0.778
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.819 0.778
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.819 0.722
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.819 0.722
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.27991s0092.1.p GATA 213 248

Links

Other GATA family TFs
Other Boechera stricta TFs

603 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_31610 Aegilops tauschii F775_31610 N 0.000
BRADI2G55797 Brachypodium distachyon BRADI2G55797 N 0.000
LPERR01G32800 Leersia perrieri LPERR01G32800 N 0.000
LPERR05G14380 Leersia perrieri LPERR05G14380 N 0.000
MDP0000289018 Malus domestica MDP0000289018 I 0.000
GSMUA_Achr11G09110_001 Musa acuminata GSMUA_Achr11G09110_001 N 0.000
OBART01G38220 Oryza barthii OBART01G38220 N 0.000
OB05G25990 Oryza brachyantha OB05G25990 N 0.000
ORGLA01G0320500 Oryza glaberrima ORGLA01G0320500 N 0.000
OGLUM05G19240 Oryza glumaepatula OGLUM05G19240 N 0.000
OGLUM05G19230 Oryza glumaepatula OGLUM05G19230 N 0.000
OGLUM01G42400 Oryza glumaepatula OGLUM01G42400 N 0.000
BGIOSGA017964 Oryza indica BGIOSGA017964 N 0.000
BGIOSGA004852 Oryza indica BGIOSGA004852 N 0.000
BGIOSGA017965 Oryza indica BGIOSGA017965 N 0.000
OMERI01G35110 Oryza meridionalis OMERI01G35110 N 0.000
ONIVA05G19090 Oryza nivara ONIVA05G19090 N 0.000
ONIVA01G42920 Oryza nivara ONIVA01G42920 N 0.000
OPUNC01G36990 Oryza punctata OPUNC01G36990 N 0.000
OPUNC05G16000 Oryza punctata OPUNC05G16000 N 0.000
ORUFI01G41590 Oryza rufipogon ORUFI01G41590 N 0.000
ORUFI05G19330 Oryza rufipogon ORUFI05G19330 N 0.000
ORUFI05G19340 Oryza rufipogon ORUFI05G19340 N 0.000
OS01G0863300 Oryza sativa OS01G0863300 N 0.000
OS05G0442400 Oryza sativa OS05G0442400 N 0.000
Pavir.J08778 Panicum virgatum Pavir.J08778 N 0.000
Pavir.J02275 Panicum virgatum Pavir.J02275 N 0.000
Pavir.Ea03744 Panicum virgatum Pavir.Ea03744 N 0.000
Si003047m.g Setaria italica Si003047m.g N 0.000
Si023363m.g Setaria italica Si023363m.g N 0.000
Sb09g021770 Sorghum bicolor Sb09g021770 N 0.000
Sb03g040730 Sorghum bicolor Sb03g040730 N 0.000
TRAES3BF019300020CFD_g Triticum aestivum TRAES3BF019300020CFD_g N 0.000
GRMZM2G027914 Zea mays GRMZM2G027914 N 0.000
GRMZM2G091201 Zea mays GRMZM2G091201 N 0.000
GRMZM2G143640 Zea mays GRMZM2G143640 N 0.000