Cagra.1742s0041 (Capsella grandiflora)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cagra.1742s0041 T196426_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.867 1.000
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.848 0.917
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.843 0.833
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.843 0.833
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.843 0.833
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.843 0.833
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.837 0.806
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.837 0.806
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.832 0.806
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.832 0.806
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.832 0.806
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.832 0.806
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.832 0.806
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.823 0.806
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.823 0.806
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.823 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.778
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1742s0041.1.p GATA 232 267

Links

Other GATA family TFs
Other Capsella grandiflora TFs

611 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB03766.1 Alternaria brassicicola AB03766.1 N 0.000
BAUCODRAFT_70890 Baudoinia compniacensis BAUCODRAFT_70890 I 0.000
COCC4DRAFT_76975 Bipolaris maydis COCC4DRAFT_76975 N 0.000
COCMIDRAFT_106375 Bipolaris oryzae COCMIDRAFT_106375 N 0.000
COCSADRAFT_34658 Bipolaris sorokiniana COCSADRAFT_34658 N 0.000
COCVIDRAFT_14231 Bipolaris victoriae COCVIDRAFT_14231 N 0.000
COCCADRAFT_107226 Bipolaris zeicola COCCADRAFT_107226 N 0.000
BGHDH14_bgh01891 Blumeria graminis BGHDH14_bgh01891 I 0.000
DOTSEDRAFT_54819 Dothistroma septosporum DOTSEDRAFT_54819 I 0.000
LEMA_P047940.1 Leptosphaeria maculans LEMA_P047940.1 N 0.000
MPH_00746 Macrophomina phaseolina MPH_00746 N 0.000
MBM_05037 Marssonina brunnea MBM_05037 N 0.000
estExt_Genewise1Plus.C_13865 Mycosphaerella fijiensis estExt_Genewise1Plus.C_13865 I 0.000
estExt_fgenesh1_pg.C_chr_60424 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_60424 I 0.000
SNOG_04842 Phaeosphaeria nodorum SNOG_04842 N 0.000
MYCFIDRAFT_204155 Pseudocercospora fijiensis MYCFIDRAFT_204155 I 0.000
PTRG_03911 Pyrenophora triticirepentis PTRG_03911 N 0.000
SBOR_8201 Sclerotinia borealis SBOR_8201 N 0.000
SETTUDRAFT_134164 Setosphaeria turcica SETTUDRAFT_134164 N 0.000
SEPMUDRAFT_149208 Sphaerulina musiva SEPMUDRAFT_149208 N 0.000
SNOG_04842 Stagonospora nodorum SNOG_04842 N 0.000
PV09_03784 Verruconis gallopava PV09_03784 N 0.000
Mycgr3G109947 Zymoseptoria tritici Mycgr3G109947 I 0.000