Pavir.Ca00998 (Panicum virgatum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Pavir.Ca00998 T196729_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.862 0.944
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.862 0.944
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.820 0.889
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.820 0.889
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00998.1.p GATA 148 183

Links

Other GATA family TFs
Other Panicum virgatum TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_001_00810 Aquilegia coerulea Aquca_001_00810 N
OCP3 Arabidopsis lyrata fgenesh2_kg.6__1093__AT5G11270.1 N
OCP3 Arabidopsis thaliana AT5G11270 N
Bostr.23997s0022 Boechera stricta Bostr.23997s0022 N
BRADI1G36770 Brachypodium distachyon BRADI1G36770 N
BRADI1G58817 Brachypodium distachyon BRADI1G58817 N
Bo9g171420 Brassica oleracea Bo9g171420 N
Bra008975 Brassica rapa Bra008975 N
PK00680.1 Cannabis sativa PK00680.1 N
Cagra.7526s0026 Capsella grandiflora Cagra.7526s0026 N
Carubv10002492m.g Capsella rubella Carubv10002492m.g N
evm.TU.supercontig_115.10 Carica papaya evm.TU.supercontig_115.10 N
Cla021272 Citrullus lanatus Cla021272 N
Ciclev10010768m.g Citrus clementina Ciclev10010768m.g N
orange1.1g040593m.g Citrus sinensis orange1.1g040593m.g N
Thhalv10013990m.g Eutrema salsugineum Thhalv10013990m.g N
gene11668-v1.0-hybrid Fragaria vesca gene11668-v1.0-hybrid N
GLYMA06G07330 Glycine max GLYMA06G07330 N
GLYMA04G07230 Glycine max GLYMA04G07230 N
Gorai.004G274200 Gossypium raimondii Gorai.004G274200 N
MLOC_45474 Hordeum vulgare MLOC_45474 N
Lus10002899.g Linum usitatissimum Lus10002899.g N
Lus10002029.g Linum usitatissimum Lus10002029.g N
chr1.CM0442.170.nd Lotus japonicus chr1.CM0442.170.nd N
MDP0000202143 Malus domestica MDP0000202143 N
MDP0000119866 Malus domestica MDP0000119866 N
cassava18449.valid.m1 Manihot esculenta cassava18449.valid.m1 N
GSMUA_Achr7G08370_001 Musa acuminata GSMUA_Achr7G08370_001 N
OBART06G20210 Oryza barthii OBART06G20210 N
OB06G27850 Oryza brachyantha OB06G27850 N
OGLUM06G21270 Oryza glumaepatula OGLUM06G21270 N
BGIOSGA023211 Oryza indica BGIOSGA023211 N
OLONG_013537 Oryza longistaminata OLONG_013537 N
OMERI06G20820 Oryza meridionalis OMERI06G20820 N
ONIVA06G23990 Oryza nivara ONIVA06G23990 N
OPUNC06G18430 Oryza punctata OPUNC06G18430 N
ORUFI06G21620 Oryza rufipogon ORUFI06G21620 N
OS06G0601000 Oryza sativa OS06G0601000 N
Pm004594 Prunus mume Pm004594 N
PRUPE_ppa007560mg Prunus persica PRUPE_ppa007560mg N
29848.m004652 Ricinus communis 29848.m004652 N
Solyc08g061140.2 Solanum lycopersicum Solyc08g061140.2 N
PGSC0003DMG400020785 Solanum tuberosum PGSC0003DMG400020785 N
TCM_038389 Theobroma cacao TCM_038389 N
Traes_7DL_613F5240E Triticum aestivum Traes_7DL_613F5240E N
Traes_7BL_E2E7AA383 Triticum aestivum Traes_7BL_E2E7AA383 N
Traes_7AL_0FFE02C4C Triticum aestivum Traes_7AL_0FFE02C4C N
OCP3 Vitis vinifera VIT_04s0008g05190 N