Pavir.Ib02277 (Panicum virgatum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Pavir.Ib02277 T196757_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.853 0.944
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.853 0.944
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.847 0.806
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.843 0.806
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.838 0.861
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.833 0.833
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.833 0.833
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.833 0.833
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.832 0.806
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.832 0.806
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.832 0.806
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.830 0.778
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.830 0.778
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.823 0.806
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.823 0.806
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.823 0.806
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.819 0.778
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.819 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib02277.1.p GATA 270 305

Links

Other GATA family TFs
Other Panicum virgatum TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_004_00748 Aquilegia coerulea Aquca_004_00748 I 0.000
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I 0.000
scaffold_402920.1 Arabidopsis lyrata scaffold_402920.1 N 0.000
fgenesh2_kg.5__2108__AT3G56770.1 Arabidopsis lyrata fgenesh2_kg.5__2108__AT3G56770.1 N 0.000
BHLH106 Arabidopsis thaliana AT2G41130 N 0.000
Bostr.20505s0075 Boechera stricta Bostr.20505s0075 N 0.000
Bostr.9345s0019 Boechera stricta Bostr.9345s0019 N 0.000
BRADI1G04280 Brachypodium distachyon BRADI1G04280 N 0.000
BRADI2G07050 Brachypodium distachyon BRADI2G07050 N 0.000
Bo3g035410 Brassica oleracea Bo3g035410 N 0.000
Bo4g190700 Brassica oleracea Bo4g190700 N 0.000
Bo4g112750 Brassica oleracea Bo4g112750 N 0.000
Bo4g012960 Brassica oleracea Bo4g012960 N 0.000
Bra016951 Brassica rapa Bra016951 N 0.000
Bra004599 Brassica rapa Bra004599 N 0.000
Bra014672 Brassica rapa Bra014672 N 0.000
PK23387.1 Cannabis sativa PK23387.1 N 0.000
Cagra.1642s0077 Capsella grandiflora Cagra.1642s0077 N 0.000
Cagra.0578s0007 Capsella grandiflora Cagra.0578s0007 N 0.000
Carubv10017947m.g Capsella rubella Carubv10017947m.g N 0.000
evm.TU.supercontig_92.83 Carica papaya evm.TU.supercontig_92.83 N 0.000
Ca_07159 Cicer arietinum Ca_07159 N 0.000
Cla017413 Citrullus lanatus Cla017413 N 0.000
Cla019977 Citrullus lanatus Cla019977 I 0.000
Ciclev10012626m.g Citrus clementina Ciclev10012626m.g N 0.000
orange1.1g026479m.g Citrus sinensis orange1.1g026479m.g N 0.000
Cucsa.213230 Cucumis sativus Cucsa.213230 I 0.000
Cucsa.340200 Cucumis sativus Cucsa.340200 N 0.000
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I 0.000
Eucgr.A02230 Eucalyptus grandis Eucgr.A02230 N 0.000
Thhalv10006410m.g Eutrema salsugineum Thhalv10006410m.g N 0.000
Thhalv10017546m.g Eutrema salsugineum Thhalv10017546m.g N 0.000
gene14814-v1.0-hybrid Fragaria vesca gene14814-v1.0-hybrid N 0.000
GLYMA02G23590 Glycine max GLYMA02G23590 N 0.000
GLYMA19G30910 Glycine max GLYMA19G30910 N 0.000
GLYMA03G28150 Glycine max GLYMA03G28150 N 0.000
Gorai.007G352300 Gossypium raimondii Gorai.007G352300 N 0.000
Gorai.009G163400 Gossypium raimondii Gorai.009G163400 I 0.000
Lus10018020.g Linum usitatissimum Lus10018020.g N 0.000
Lus10042017.g Linum usitatissimum Lus10042017.g N 0.000
chr1.CM0816.330.nc Lotus japonicus chr1.CM0816.330.nc N 0.000
MDP0000249969 Malus domestica MDP0000249969 I 0.000
MDP0000213892 Malus domestica MDP0000213892 N 0.000
MDP0000138102 Malus domestica MDP0000138102 N 0.000
cassava7163.valid.m1 Manihot esculenta cassava7163.valid.m1 N 0.000
cassava32077.m1 Manihot esculenta cassava32077.m1 I 0.000
cassava18812.valid.m1 Manihot esculenta cassava18812.valid.m1 I 0.000
mgf009382m Mimulus guttatus mgf009382m N 0.000
GSMUA_Achr8G23980_001 Musa acuminata GSMUA_Achr8G23980_001 N 0.000
ORGLA03G0352000 Oryza glaberrima ORGLA03G0352000 N 0.000
OS03G0811400 Oryza sativa OS03G0811400 N 0.000
Pavir.J24868 Panicum virgatum Pavir.J24868 N 0.000
Pavir.J02699 Panicum virgatum Pavir.J02699 N 0.000
POPTR_0006s03550 Populus trichocarpa POPTR_0006s03550 N 0.000
POPTR_0016s03460 Populus trichocarpa POPTR_0016s03460 N 0.000
Pm025589 Prunus mume Pm025589 N 0.000
PRUPE_ppa011532mg Prunus persica PRUPE_ppa011532mg N 0.000
30180.m001071 Ricinus communis 30180.m001071 N 0.000
SapurV1A.0159s0020 Salix purpurea SapurV1A.0159s0020 N 0.000
SapurV1A.0189s0140 Salix purpurea SapurV1A.0189s0140 N 0.000
SapurV1A.1185s0010 Salix purpurea SapurV1A.1185s0010 I 0.000
SapurV1A.1821s0030 Salix purpurea SapurV1A.1821s0030 I 0.000
Solyc10g078380.1 Solanum lycopersicum Solyc10g078380.1 N 0.000
PGSC0003DMG400008378 Solanum tuberosum PGSC0003DMG400008378 N 0.000
Sb01g003830 Sorghum bicolor Sb01g003830 N 0.000
TCM_024016 Theobroma cacao TCM_024016 N 0.000
TCM_029711 Theobroma cacao TCM_029711 I 0.000
Traes_5BL_CBFAD4B59 Triticum aestivum Traes_5BL_CBFAD4B59 N 0.000
VIT_08s0040g01240 Vitis vinifera VIT_08s0040g01240 I 0.000
VIT_14s0068g01580 Vitis vinifera VIT_14s0068g01580 I 0.000
GRMZM2G027068 Zea mays GRMZM2G027068 N 0.000