Thhalv10004566m.g (Eutrema salsugineum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Thhalv10004566m.g T196822_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.862 0.861
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.851 0.917
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.851 0.917
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.847 0.833
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.847 0.833
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.847 0.833
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.843 0.806
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.843 0.806
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.843 0.806
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.843 0.806
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.843 0.806
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.832 0.778
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.832 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.823 0.889
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.722
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.819 0.722
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.819 0.722
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10004566m GATA 244 279

Links

Other GATA family TFs
Other Eutrema salsugineum TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g06901 Acanthocheilonema viteae nAv.1.0.1.g06901 I 0.000
ALUE_0001355401 Ascaris lumbricoides ALUE_0001355401 I 0.000
ASU_01592 Ascaris suum ASU_01592 I 0.000
AGOS_AAL010W Ashbya gossypii AGOS_AAL010W I 0.000
ENSAMXG00000021077 Astyanax mexicanus ENSAMXG00000021077 I 0.000
BGIBMGA012712 Bombyx mori BGIBMGA012712 I 0.000
ENSP00000366022-D1 Bos grunniens ENSP00000366022-D1 I 0.000
RFX8 Bos taurus ENSBTAG00000033998 I 0.000
Bm3804 Brugia malayi Bm3804 I 0.000
RFX8 Canis familiaris ENSCAFG00000002190 I 0.000
ENSCSAG00000017155 Chlorocebus sabaeus ENSCSAG00000017155 I 0.000
rfx1/2/3 Ciona intestinalis ENSCING00000009186 I 0.000
RFX8 Dasypus novemcinctus ENSDNOG00000007529 I 0.000
nDi.2.2.2.g03767 Dirofilaria immitis nDi.2.2.2.g03767 I 0.000
EEL_0000135001 Elaeophora elaphi EEL_0000135001 I 0.000
EVEC_0001085201 Enterobius vermicularis EVEC_0001085201 I 0.000
GPUH_0000252501 Gongylonema pulchrum GPUH_0000252501 I 0.000
RFX8 Gorilla gorilla ENSGGOG00000011918 I 0.000
HelroG70386 Helobdella robusta HelroG70386 I 0.000
ENSSTOG00000005252 Ictidomys tridecemlineatus ENSSTOG00000005252 I 0.000
SAKL0D08734g Lachancea kluyveri SAKL0D08734g I 0.000
nLs.2.1.2.g03959 Litomosoides sigmodontis nLs.2.1.2.g03959 I 0.000
LOAG_17230 Loa loa LOAG_17230 I 0.000
RFX8 Meleagris gallopavo ENSMGAG00000014805 I 0.000
MCOS_0000782401 Mesocestoides corti MCOS_0000782401 I 0.000
RFX8 Monodelphis domestica ENSMODG00000025480 I 0.000
estExt_fgenesh2_pg.C_390014 Monosiga brevicollis estExt_fgenesh2_pg.C_390014 I 0.000
Rfx8 Mus musculus ENSMUSG00000057173 I 0.000
RFX8 Myotis lucifugus ENSMLUG00000017785 I 0.000
OFLC_0000277501 Onchocerca flexuosa OFLC_0000277501 I 0.000
nOo.2.0.1.g04858 Onchocerca ochengi nOo.2.0.1.g04858 I 0.000
WBGene00247845 Onchocerca volvulus WBGene00247845 I 0.000
RFX8 Oryctolagus cuniculus ENSOCUG00000017895 I 0.000
RFX8 Otolemur garnettii ENSOGAG00000033445 I 0.000
ENSOARG00000013205 Ovis aries ENSOARG00000013205 I 0.000
RFX8 Pan troglodytes ENSPTRG00000012293 I 0.000
ENSPSIG00000016113 Pelodiscus sinensis ENSPSIG00000016113 I 0.000
ENSPPYG00000012106 Pongo abelii ENSPPYG00000012106 I 0.000
Rfx8 Rattus norvegicus ENSRNOG00000058243 I 0.000
AACERI_AaceriAAL010W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAL010W I 0.000
PTSG_10225 Salpingoeca rosetta PTSG_10225 I 0.000
Sjc_0102030 Schistosoma japonicum Sjc_0102030 D 0.000
Smp_170910 Schistosoma mansoni Smp_170910 I 0.000
G4VLF2_SCHMA Schistosoma mansoni G4VLF2_SCHMA D 0.000
SPPG_01648 Spizellomyces punctatus SPPG_01648 I 0.000
SMUV_0001085601 Syphacia muris SMUV_0001085601 I 0.000
TCNE_0001843801 Toxocara canis TCNE_0001843801 I 0.000
TRE_0000274301 Trichobilharzia regenti TRE_0000274301 I 0.000
J056_003501 Wallemia ichthyophaga J056_003501 N 0.000
WUBG_07284 Wuchereria bancrofti WUBG_07284 I 0.000