Smp_171130 (Schistosoma mansoni)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 Smp_171130 T198146_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.664 0.664
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.664 0.664
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.664 0.664
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.664 0.664
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Smp_171130.1:pep GCM 248 385

Links

Other GCM family TFs
Other Schistosoma mansoni TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.1__1889__AT1G17310.1 Arabidopsis lyrata fgenesh2_kg.1__1889__AT1G17310.1 N
scaffold_202161.1 Arabidopsis lyrata scaffold_202161.1 N
AT1G17310 Arabidopsis thaliana AT1G17310 N
Bostr.10273s0116 Boechera stricta Bostr.10273s0116 N
Bostr.7128s0342 Boechera stricta Bostr.7128s0342 N
Bo6g091550 Brassica oleracea Bo6g091550 N
Bo6g115840 Brassica oleracea Bo6g115840 N
Bo8g104960 Brassica oleracea Bo8g104960 N
Bra003884 Brassica rapa Bra003884 N
Bra026674 Brassica rapa Bra026674 N
Cagra.0824s0100 Capsella grandiflora Cagra.0824s0100 N
Cagra.1013s0063 Capsella grandiflora Cagra.1013s0063 N
Carubv10011075m.g Capsella rubella Carubv10011075m.g N
Carubv10021825m.g Capsella rubella Carubv10021825m.g N
Thhalv10019133m.g Eutrema salsugineum Thhalv10019133m.g N