CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ACYPI010082
(
Acyrthosiphon pisum
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ACYPI010082
T204160_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Six4
M00563_2.00
Drosophila melanogaster
NNDANMHNN
NNDKNTHNN
PBM
Busser et al.(2012a)
Six4
0.850
0.906
Six4
M06530_2.00
Drosophila melanogaster
TGABAC
GTVTCA
B1H
Mathelier et al.(2014)
MA0204.1
0.850
0.906
Six4
M06334_2.00
Drosophila melanogaster
WDDTGABAC
GTVTCAHHW
B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364
0.850
0.906
Six4
M06335_2.00
Drosophila melanogaster
NTGAKACB
VGTMTCAN
B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364
0.850
0.906
Six4
M06336_2.00
Drosophila melanogaster
NNNTGABA
TVTCANNN
B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364
0.850
0.906
SIX5
M08208_2.00
Homo sapiens
GARWTGTAGT
ACTACAWYTC
ChIP-seq
Contrino et al.(2012)
Mv121
0.848
0.830
SIX5
M08209_2.00
Homo sapiens
GGAGTTGT
ACAACTCC
ChIP-seq
Contrino et al.(2012)
Mv123
0.848
0.830
SIX5
M10738_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX5_01
0.848
0.830
SIX5
M10739_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX5_02
0.848
0.830
Six4
M00461_2.00
Mus musculus
NNKABMHNN
NNDKVTMNN
PBM
Berger et al.(2008)
Six4_2860
0.827
0.792
SIX4
M04939_2.00
Homo sapiens
NVYGATACVB
VBGTATCRBN
SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX
0.827
0.792
Six4
M09198_2.00
Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH
Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C
0.827
0.792
SIX4
M10646_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX4_Q3
0.827
0.792
SIX4
M04940_2.00
Homo sapiens
NBGTAWCRHN
NDYGWTACVN
SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX
0.827
0.792
Six2
M00425_2.00
Mus musculus
NNAYMYNN
NNRKRTNN
PBM
Berger et al.(2008)
Six2_2307
0.708
0.736
Six1
M00512_2.00
Mus musculus
NNDATMYNNN
NNNRKATHNN
PBM
Berger et al.(2008)
Six1_0935
0.708
0.736
so
M02117_2.00
Drosophila melanogaster
NDATMYNNN
NNNRKATHN
PBM
Weirauch et al.(2014)
pTH5690
0.708
0.736
so
M03800_2.00
Drosophila melanogaster
NYGATAYB
VRTATCRN
SELEX
Nitta et al.(2015)
so_1
0.708
0.736
so
M03801_2.00
Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR
SELEX
Nitta et al.(2015)
so_2
0.708
0.736
so
M03802_2.00
Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR
SELEX
Nitta et al.(2015)
so_3
0.708
0.736
so
M03803_2.00
Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY
SELEX
Nitta et al.(2015)
so_4
0.708
0.736
SIX1
M05094_2.00
Homo sapiens
NNYGATACVB
VBGTATCRNN
SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX
0.708
0.736
SIX1
M05096_2.00
Homo sapiens
NNYGATAYVB
VBRTATCRNN
SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX
0.708
0.736
SIX2
M05285_2.00
Homo sapiens
NNYGATACSB
VSGTATCRNN
SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX
0.708
0.736
SIX2
M05287_2.00
Homo sapiens
NSGTRWCRYN
NRYGWYACSN
SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX
0.708
0.736
so
M06497_2.00
Drosophila melanogaster
TGATAC
GTATCA
B1H
Mathelier et al.(2014)
MA0246.1
0.708
0.736
so
M06268_2.00
Drosophila melanogaster
NRTGATA
TATCAYN
B1H
Zhu et al.(2011)
So_Cell_FBgn0003460
0.708
0.736
so
M06269_2.00
Drosophila melanogaster
NNNTGATA
TATCANNN
B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460
0.708
0.736
SIX1
M08130_2.00
Homo sapiens
GWAACCTGANM
KNTCAGGTTWC
ChIP-seq
Mathelier et al.(2014)
MA1118.1
0.708
0.736
SIX2
M08133_2.00
Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN
ChIP-seq
Mathelier et al.(2014)
MA1119.1
0.708
0.736
SIX1
M09142_2.00
Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A
0.708
0.736
SIX2
M09157_2.00
Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A
0.708
0.736
Six2
M09185_2.00
Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A
0.708
0.736
Six1
M09579_2.00
Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC
Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150
0.708
0.736
SIX1
M10684_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX1_Q3_01
0.708
0.736
SIX1
M10685_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX1_Q3
0.708
0.736
SIX1
M05095_2.00
Homo sapiens
NNYGATABNB
VNVTATCRNN
SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX
0.708
0.736
SIX1
M05097_2.00
Homo sapiens
NNYGATAYSB
VSRTATCRNN
SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX
0.708
0.736
SIX2
M05286_2.00
Homo sapiens
NBRTATCRNN
NNYGATAYVN
SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX
0.708
0.736
SIX2
M05288_2.00
Homo sapiens
VBRTAWCRNN
NNYGWTAYVB
SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX
0.708
0.736
ceh-34
M00672_2.00
Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN
PBM
Narasimhan et al.(2015)
pTH9708
0.638
0.585
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ACYPI010082-PA
Homeodomain
179
231
YCFKEKSRNALKDCYLKNRYPTPDEKRELARRTGLTLTQVSNWFKNRRQRDRT
Links
Other
Homeodomain
family TFs
Other
Acyrthosiphon pisum
TFs
541 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_06069
Aegilops tauschii
F775_06069
I
0.000
AMTR_s00022p00128600
Amborella trichopoda
AMTR_s00022p00128600
I
0.000
Aquca_007_00955
Aquilegia coerulea
Aquca_007_00955
I
0.000
fgenesh2_kg.1__2281__AT1G20910.1
Arabidopsis lyrata
fgenesh2_kg.1__2281__AT1G20910.1
I
0.000
fgenesh2_kg.2__1939__AT1G76510.1
Arabidopsis lyrata
fgenesh2_kg.2__1939__AT1G76510.1
I
0.000
fgenesh2_kg.3__3325__AT2G17410.1
Arabidopsis lyrata
fgenesh2_kg.3__3325__AT2G17410.1
I
0.000
ARID6
Arabidopsis thaliana
AT1G20910
D
0.000
AT1G76510
Arabidopsis thaliana
AT1G76510
I
0.000
ARID3
Arabidopsis thaliana
AT2G17410
D
0.000
Bostr.18351s0201
Boechera stricta
Bostr.18351s0201
I
0.000
Bostr.20129s0090
Boechera stricta
Bostr.20129s0090
I
0.000
Bostr.7128s0681
Boechera stricta
Bostr.7128s0681
I
0.000
BRADI1G55550
Brachypodium distachyon
BRADI1G55550
I
0.000
BRADI3G53270
Brachypodium distachyon
BRADI3G53270
I
0.000
Bo5g030830
Brassica oleracea
Bo5g030830
I
0.000
Bo6g120610
Brassica oleracea
Bo6g120610
I
0.000
Bo7g014510
Brassica oleracea
Bo7g014510
I
0.000
Bo7g061260
Brassica oleracea
Bo7g061260
I
0.000
Bo8g070520
Brassica oleracea
Bo8g070520
I
0.000
Bo9g024490
Brassica oleracea
Bo9g024490
I
0.000
Bra002058
Brassica rapa
Bra002058
I
0.000
Bra012257
Brassica rapa
Bra012257
I
0.000
Bra016443
Brassica rapa
Bra016443
I
0.000
Bra025855
Brassica rapa
Bra025855
I
0.000
Bra037275
Brassica rapa
Bra037275
I
0.000
PK02181.1
Cannabis sativa
PK02181.1
I
0.000
PK12537.1
Cannabis sativa
PK12537.1
I
0.000
Cagra.2281s0033
Capsella grandiflora
Cagra.2281s0033
I
0.000
Cagra.6160s0006
Capsella grandiflora
Cagra.6160s0006
I
0.000
Cagra.6788s0003
Capsella grandiflora
Cagra.6788s0003
I
0.000
Carubv10009301m.g
Capsella rubella
Carubv10009301m.g
I
0.000
Carubv10012979m.g
Capsella rubella
Carubv10012979m.g
I
0.000
Carubv10020299m.g
Capsella rubella
Carubv10020299m.g
I
0.000
evm.TU.supercontig_26.2
Carica papaya
evm.TU.supercontig_26.2
I
0.000
Ca_04797
Cicer arietinum
Ca_04797
I
0.000
Ca_10698
Cicer arietinum
Ca_10698
I
0.000
Cla009111
Citrullus lanatus
Cla009111
I
0.000
Ciclev10001099m.g
Citrus clementina
Ciclev10001099m.g
I
0.000
Ciclev10025351m.g
Citrus clementina
Ciclev10025351m.g
I
0.000
Ciclev10030351m.g
Citrus clementina
Ciclev10030351m.g
I
0.000
orange1.1g004663m.g
Citrus sinensis
orange1.1g004663m.g
I
0.000
orange1.1g009744m.g
Citrus sinensis
orange1.1g009744m.g
I
0.000
orange1.1g012780m.g
Citrus sinensis
orange1.1g012780m.g
I
0.000
Cucsa.323280
Cucumis sativus
Cucsa.323280
I
0.000
Eucgr.F01815
Eucalyptus grandis
Eucgr.F01815
I
0.000
Eucgr.I01546
Eucalyptus grandis
Eucgr.I01546
I
0.000
Eucgr.I02198
Eucalyptus grandis
Eucgr.I02198
I
0.000
Thhalv10007750m.g
Eutrema salsugineum
Thhalv10007750m.g
I
0.000
Thhalv10018578m.g
Eutrema salsugineum
Thhalv10018578m.g
I
0.000
Thhalv10022553m.g
Eutrema salsugineum
Thhalv10022553m.g
I
0.000
gene12982-v1.0-hybrid
Fragaria vesca
gene12982-v1.0-hybrid
I
0.000
gene17116-v1.0-hybrid
Fragaria vesca
gene17116-v1.0-hybrid
I
0.000
GLYMA01G36040
Glycine max
GLYMA01G36040
I
0.000
GLYMA04G01560
Glycine max
GLYMA04G01560
I
0.000
GLYMA05G10756
Glycine max
GLYMA05G10756
I
0.000
GLYMA06G01640
Glycine max
GLYMA06G01640
I
0.000
GLYMA09G32820
Glycine max
GLYMA09G32820
I
0.000
GLYMA11G09370
Glycine max
GLYMA11G09370
I
0.000
GLYMA16G21840
Glycine max
GLYMA16G21840
I
0.000
Gorai.002G112400
Gossypium raimondii
Gorai.002G112400
I
0.000
Gorai.003G000800
Gossypium raimondii
Gorai.003G000800
I
0.000
Gorai.012G137700
Gossypium raimondii
Gorai.012G137700
I
0.000
LPERR02G24480
Leersia perrieri
LPERR02G24480
I
0.000
LPERR06G17780
Leersia perrieri
LPERR06G17780
I
0.000
Lus10001618.g
Linum usitatissimum
Lus10001618.g
I
0.000
Lus10016045.g
Linum usitatissimum
Lus10016045.g
I
0.000
Lus10022981.g
Linum usitatissimum
Lus10022981.g
I
0.000
chr1.CM0150.370.nc
Lotus japonicus
chr1.CM0150.370.nc
I
0.000
MDP0000188323
Malus domestica
MDP0000188323
I
0.000
MDP0000834789
Malus domestica
MDP0000834789
I
0.000
MDP0000890776
Malus domestica
MDP0000890776
I
0.000
cassava10018.m1
Manihot esculenta
cassava10018.m1
I
0.000
cassava23401.valid.m1
Manihot esculenta
cassava23401.valid.m1
I
0.000
cassava24840.valid.m1
Manihot esculenta
cassava24840.valid.m1
I
0.000
cassava27165.m1
Manihot esculenta
cassava27165.m1
I
0.000
MTR_3g116200
Medicago truncatula
MTR_3g116200
I
0.000
MTR_5g024920
Medicago truncatula
MTR_5g024920
I
0.000
mg023226m
Mimulus guttatus
mg023226m
I
0.000
mgf001698m
Mimulus guttatus
mgf001698m
I
0.000
mgf002691m
Mimulus guttatus
mgf002691m
I
0.000
mgf005009m
Mimulus guttatus
mgf005009m
I
0.000
mgf014392m
Mimulus guttatus
mgf014392m
I
0.000
GSMUA_Achr3G11660_001
Musa acuminata
GSMUA_Achr3G11660_001
I
0.000
GSMUA_Achr4G19240_001
Musa acuminata
GSMUA_Achr4G19240_001
I
0.000
GSMUA_AchrUn_randomG12940_001
Musa acuminata
GSMUA_AchrUn_randomG12940_001
I
0.000
OBART02G30070
Oryza barthii
OBART02G30070
I
0.000
OBART06G21220
Oryza barthii
OBART06G21220
I
0.000
OB02G37240
Oryza brachyantha
OB02G37240
I
0.000
OB06G29250
Oryza brachyantha
OB06G29250
I
0.000
OGLUM02G30740
Oryza glumaepatula
OGLUM02G30740
I
0.000
OGLUM06G22430
Oryza glumaepatula
OGLUM06G22430
I
0.000
BGIOSGA005739
Oryza indica
BGIOSGA005739
I
0.000
BGIOSGA023283
Oryza indica
BGIOSGA023283
I
0.000
OLONG_022248
Oryza longistaminata
OLONG_022248
I
0.000
OMERI01G31330
Oryza meridionalis
OMERI01G31330
I
0.000
OMERI02G28920
Oryza meridionalis
OMERI02G28920
I
0.000
ONIVA02G32840
Oryza nivara
ONIVA02G32840
I
0.000
ONIVA06G25180
Oryza nivara
ONIVA06G25180
I
0.000
OPUNC02G27630
Oryza punctata
OPUNC02G27630
I
0.000
OPUNC06G19340
Oryza punctata
OPUNC06G19340
I
0.000
ORUFI02G31730
Oryza rufipogon
ORUFI02G31730
I
0.000
ORUFI06G22870
Oryza rufipogon
ORUFI06G22870
I
0.000
OS02G0714300
Oryza sativa
OS02G0714300
I
0.000
OS06G0622300
Oryza sativa
OS06G0622300
I
0.000
Pavir.Aa00633
Panicum virgatum
Pavir.Aa00633
I
0.000
Pavir.Ab03084
Panicum virgatum
Pavir.Ab03084
I
0.000
Pavir.Db00824
Panicum virgatum
Pavir.Db00824
I
0.000
PDK_20s1315201g001
Phoenix dactylifera
PDK_20s1315201g001
I
0.000
PDK_20s1326081g004
Phoenix dactylifera
PDK_20s1326081g004
I
0.000
e_gw1.66.61.1
Physcomitrella patens
e_gw1.66.61.1
I
0.000
gw1.131.40.1
Physcomitrella patens
gw1.131.40.1
I
0.000
POPTR_0001s46070
Populus trichocarpa
POPTR_0001s46070
I
0.000
POPTR_0002s00550
Populus trichocarpa
POPTR_0002s00550
I
0.000
POPTR_0004s21870
Populus trichocarpa
POPTR_0004s21870
I
0.000
POPTR_0011s14850
Populus trichocarpa
POPTR_0011s14850
I
0.000
Pm020703
Prunus mume
Pm020703
I
0.000
Pm022898
Prunus mume
Pm022898
I
0.000
Pm026967
Prunus mume
Pm026967
I
0.000
PRUPE_ppa001071mg
Prunus persica
PRUPE_ppa001071mg
I
0.000
PRUPE_ppa003469mg
Prunus persica
PRUPE_ppa003469mg
I
0.000
PRUPE_ppa006712mg
Prunus persica
PRUPE_ppa006712mg
I
0.000
29682.m000576
Ricinus communis
29682.m000576
I
0.000
30162.m001290
Ricinus communis
30162.m001290
I
0.000
30170.m013806
Ricinus communis
30170.m013806
I
0.000
SapurV1A.0016s0160
Salix purpurea
SapurV1A.0016s0160
I
0.000
SapurV1A.0047s0480
Salix purpurea
SapurV1A.0047s0480
I
0.000
SapurV1A.0478s0090
Salix purpurea
SapurV1A.0478s0090
I
0.000
SapurV1A.0554s0250
Salix purpurea
SapurV1A.0554s0250
I
0.000
SELMODRAFT_271464
Selaginella moellendorffii
SELMODRAFT_271464
I
0.000
SELMODRAFT_445202
Selaginella moellendorffii
SELMODRAFT_445202
I
0.000
Si006372m.g
Setaria italica
Si006372m.g
I
0.000
Si017073m.g
Setaria italica
Si017073m.g
I
0.000
Solyc04g082820.2
Solanum lycopersicum
Solyc04g082820.2
I
0.000
Solyc12g094730.1
Solanum lycopersicum
Solyc12g094730.1
I
0.000
PGSC0003DMG400010001
Solanum tuberosum
PGSC0003DMG400010001
I
0.000
PGSC0003DMG400021771
Solanum tuberosum
PGSC0003DMG400021771
I
0.000
Sb04g029990
Sorghum bicolor
Sb04g029990
I
0.000
Sb10g024400
Sorghum bicolor
Sb10g024400
I
0.000
TCM_000019
Theobroma cacao
TCM_000019
I
0.000
TCM_007605
Theobroma cacao
TCM_007605
I
0.000
TCM_034809
Theobroma cacao
TCM_034809
I
0.000
Traes_2AS_49D6010DA1
Triticum aestivum
Traes_2AS_49D6010DA1
I
0.000
Traes_2BS_B3411790F
Triticum aestivum
Traes_2BS_B3411790F
I
0.000
Traes_2DL_C465ACBE4
Triticum aestivum
Traes_2DL_C465ACBE4
I
0.000
Traes_6AL_D304A3C3B
Triticum aestivum
Traes_6AL_D304A3C3B
I
0.000
Traes_6BL_936B5B999
Triticum aestivum
Traes_6BL_936B5B999
I
0.000
Traes_6DL_E6E385C31
Triticum aestivum
Traes_6DL_E6E385C31
I
0.000
TRIUR3_34317
Triticum urartu
TRIUR3_34317
I
0.000
VIT_04s0044g01840
Vitis vinifera
VIT_04s0044g01840
I
0.000
VIT_18s0122g00560
Vitis vinifera
VIT_18s0122g00560
I
0.000
GRMZM2G110109
Zea mays
GRMZM2G110109
I
0.000
GRMZM2G180654
Zea mays
GRMZM2G180654
I
0.000
GRMZM2G421899
Zea mays
GRMZM2G421899
I
0.000
GRMZM5G883993
Zea mays
GRMZM5G883993
I
0.000