Bra010310 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra010310 T205069_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.673 0.732
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra010310.1-P Homeodomain 451 506

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRHA Arabidopsis lyrata scaffold_701235.1 I 0.745
PRH Arabidopsis thaliana AT4G29940 I 0.739
Bostr.7867s0841 Boechera stricta Bostr.7867s0841 I 0.771
Bo1g014710 Brassica oleracea Bo1g014710 I 0.731
Bo3g175850 Brassica oleracea Bo3g175850 I 0.867
Bra011153 Brassica rapa Bra011153 I 0.739
Cagra.0268s0009 Capsella grandiflora Cagra.0268s0009 I 0.768
Carubv10004175m.g Capsella rubella Carubv10004175m.g I 0.768
Ca_08838 Cicer arietinum Ca_08838 I 0.654
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.795
Thhalv10024489m.g Eutrema salsugineum Thhalv10024489m.g I 0.771
gene17249-v1.0-hybrid Fragaria vesca gene17249-v1.0-hybrid I 0.684
GLYMA09G06730 Glycine max GLYMA09G06730 I 0.683
GLYMA13G00540 Glycine max GLYMA13G00540 I 0.621
GLYMA15G17956 Glycine max GLYMA15G17956 I 0.652
GLYMA17G06690 Glycine max GLYMA17G06690 I 0.617
Gorai.009G002500 Gossypium raimondii Gorai.009G002500 I 0.644
chr4.CM0244.10.nd Lotus japonicus chr4.CM0244.10.nd I 0.657
cassava27173.m1 Manihot esculenta cassava27173.m1 I 0.669
MTR_2g038000 Medicago truncatula MTR_2g038000 D 0.673
mgf003961m Mimulus guttatus mgf003961m I 0.719
POPTR_0018s13920 Populus trichocarpa POPTR_0018s13920 N 0.754
POPTR_0006s07520 Populus trichocarpa POPTR_0006s07520 N 0.753
Pm008905 Prunus mume Pm008905 I 0.664
PRUPE_ppa023964mg Prunus persica PRUPE_ppa023964mg I 0.664
29671.m000294 Ricinus communis 29671.m000294 I 0.638
SapurV1A.0140s0170 Salix purpurea SapurV1A.0140s0170 N 0.756
Solyc07g008730.1 Solanum lycopersicum Solyc07g008730.1 I 0.636
PGSC0003DMG400028740 Solanum tuberosum PGSC0003DMG400028740 I 0.636