CBG23282 (Caenorhabditis briggsae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 CBG23282 T205592_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.842 0.895
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.842 0.895
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.842 0.895
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.842 0.895
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.842 0.877
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.842 0.877
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.842 0.877
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.842 0.877
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.842 0.877
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.840 0.877
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.840 0.877
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.840 0.877
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.840 0.877
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.840 0.877
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.840 0.877
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.840 0.877
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.834 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBG23282 Homeodomain 185 241

Links

Other Homeodomain family TFs
Other Caenorhabditis briggsae TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000018236 Ailuropoda melanoleuca ENSAMEG00000018236 I 0.000
ENSAPLG00000006795 Anas platyrhynchos ENSAPLG00000006795 I 0.000
REL Anolis carolinensis ENSACAG00000003030 I 0.000
Afo_R011359 Aptenodytes forsteri Afo_R011359 I 0.000
ENSAMXG00000004647 Astyanax mexicanus ENSAMXG00000004647 I 0.000
ENSP00000295025-D1 Bos grunniens ENSP00000295025-D1 I 0.000
REL Bos taurus ENSBTAG00000015386 I 0.000
Brh_R000963 Buceros rhinoceros Brh_R000963 I 0.000
REL Callithrix jacchus ENSCJAG00000008975 I 0.000
Aan_R006375 Calypte anna Aan_R006375 I 0.000
REL Canis familiaris ENSCAFG00000002981 I 0.000
REL Cavia porcellus ENSCPOG00000011659 I 0.000
Cmyd_10008594 Chelonia mydas Cmyd_10008594 I 0.000
ENSCSAG00000014415 Chlorocebus sabaeus ENSCSAG00000014415 I 0.000
REL Choloepus hoffmanni ENSCHOG00000010935 I 0.000
rel Danio rerio ENSDARG00000055276 I 0.000
ENSETEG00000002607 Echinops telfairi ENSETEG00000002607 I 0.000
REL Equus caballus ENSECAG00000003277 I 0.000
REL Felis catus ENSFCAG00000008018 I 0.000
ENSFALG00000011066 Ficedula albicollis ENSFALG00000011066 I 0.000
REL Gallus gallus ENSGALG00000007845 I 0.000
Gfo_R008165 Geospiza fortis Gfo_R008165 I 0.000
REL Gorilla gorilla ENSGGOG00000024826 I 0.000
REL Homo sapiens ENSG00000162924 D 0.000
ENSSTOG00000005785 Ictidomys tridecemlineatus ENSSTOG00000005785 I 0.000
ENSLACG00000008544 Latimeria chalumnae ENSLACG00000008544 I 0.000
ENSLOCG00000016127 Lepisosteus oculatus ENSLOCG00000016127 I 0.000
REL Loxodonta africana ENSLAFG00000013507 I 0.000
ENSMMUP00000014199 Macaca fascicularis ENSMMUP00000014199 I 0.000
REL Macaca mulatta ENSMMUG00000010834 I 0.000
REL Meleagris gallopavo ENSMGAG00000001721 I 0.000
REL Monodelphis domestica ENSMODG00000002172 I 0.000
ENSMPUG00000005180 Mustela putorius furo ENSMPUG00000005180 I 0.000
Rel Mus musculus ENSMUSG00000020275 D 0.000
Myotis_brandtii_REL_10034307 Myotis brandtii Myotis_brandtii_REL_10034307 I 0.000
ENSNLEG00000009519 Nomascus leucogenys ENSNLEG00000009519 I 0.000
ENSONIG00000002983 Oreochromis niloticus ENSONIG00000002983 I 0.000
REL Ornithorhynchus anatinus ENSOANG00000012405 I 0.000
REL Oryctolagus cuniculus ENSOCUG00000004968 I 0.000
rel Oryzias latipes ENSORLG00000001586 I 0.000
REL Otolemur garnettii ENSOGAG00000013722 I 0.000
ENSOARG00000001457 Ovis aries ENSOARG00000001457 I 0.000
REL Pan troglodytes ENSPTRG00000011949 I 0.000
ENSPANG00000006148 Papio anubis ENSPANG00000006148 I 0.000
ENSPSIG00000013860 Pelodiscus sinensis ENSPSIG00000013860 I 0.000
ENSPFOG00000013038 Poecilia formosa ENSPFOG00000013038 I 0.000
Pvit_04537 Pogona vitticeps Pvit_04537 I 0.000
ENSPPYG00000012391 Pongo abelii ENSPPYG00000012391 I 0.000
REL Pteropus vampyrus ENSPVAG00000000364 I 0.000
Rel Rattus norvegicus ENSRNOG00000054437 I 0.000
ENSSHAG00000014405 Sarcophilus harrisii ENSSHAG00000014405 I 0.000
REL Sorex araneus ENSSARG00000011809 I 0.000
REL Sus scrofa ENSSSCG00000008388 I 0.000
REL Taeniopygia guttata ENSTGUG00000006743 I 0.000
ENSTRUG00000006394 Takifugu rubripes ENSTRUG00000006394 I 0.000
ENSTSYG00000012918 Tarsius syrichta ENSTSYG00000012918 I 0.000
Tal_R011178 Tyto alba Tal_R011178 I 0.000
REL Vicugna pacos ENSVPAG00000000493 I 0.000
rel.S Xenopus laevis XB-GENE-17342653 I 0.000
rel.L Xenopus laevis XB-GENE-993266 I 0.000
rel Xenopus tropicalis XB-GENE-993262 I 0.000
ENSXMAG00000007379 Xiphophorus maculatus ENSXMAG00000007379 I 0.000