ENSCSAVG00000001309 (Ciona savignyi)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCSAVG00000001309 T208434_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 0.947
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 0.947
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 0.947
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.930
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.965
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.930
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.930
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.930
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.930
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.930
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000002239 Homeodomain 204 260

Links

Other Homeodomain family TFs
Other Ciona savignyi TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL012039 Aedes aegypti AAEL012039 I 0.000
AALB008266 Anopheles albimanus AALB008266 I 0.000
AATE009625 Anopheles atroparvus AATE009625 I 0.000
ACHR002736 Anopheles christyi ACHR002736 I 0.000
ACUA017715 Anopheles culicifacies ACUA017715 I 0.000
ADAC002075 Anopheles darlingi ADAC002075 I 0.000
ADIR005874 Anopheles dirus ADIR005874 I 0.000
AFAF006125 Anopheles farauti AFAF006125 I 0.000
AFUN004511 Anopheles funestus AFUN004511 I 0.000
AGAP004637 Anopheles gambiae AGAP004637 I 0.000
AMAM007692 Anopheles maculatus AMAM007692 I 0.000
ASIS001386 Anopheles sinensis ASIS001386 I 0.000
ASTEI06951 Anopheles stephensi ASTEI06951 I 0.000
GB54885 Apis mellifera GB54885 I 0.000
BGIBMGA004545 Bombyx mori BGIBMGA004545 I 0.000
CpipJ_CPIJ000614 Culex pipiens CpipJ_CPIJ000614 I 0.000
CPIJ000614 Culex quinquefasciatus CPIJ000614 I 0.000
KGM_04065 Danaus plexippus KGM_04065 I 0.000
DAPPUDRAFT_346973 Daphnia pulex DAPPUDRAFT_346973 N 0.000
YQE_04546 Dendroctonus ponderosae YQE_04546 N 0.000
GF19046 Drosophila ananassae FBgn0096058 I 0.000
GG16466 Drosophila erecta FBgn0108697 I 0.000
GH23992 Drosophila grimshawi FBgn0131449 I 0.000
ci Drosophila melanogaster FBgn0004859 D 0.000
GI14119 Drosophila mojavensis FBgn0136873 I 0.000
GL18388 Drosophila persimilis FBgn0155989 I 0.000
GA27838 Drosophila pseudoobscura FBgn0249202 I 0.000
GM23237 Drosophila sechellia FBgn0178104 I 0.000
ci Drosophila simulans FBgn0012866 I 0.000
GJ14655 Drosophila virilis FBgn0201862 I 0.000
GK13666 Drosophila willistoni FBgn0215674 I 0.000
ci Drosophila yakuba FBgn0022826 I 0.000
EmuJ_000711000 Echinococcus multilocularis EmuJ_000711000 I 0.000
HMEL016327 Heliconius melpomene HMEL016327 N 0.000
HmN_000840400 Hymenolepis microstoma HmN_000840400 I 0.000
ISCW005490 Ixodes scapularis ISCW005490 I 0.000
LDEC013937 Leptinotarsa decemlineata LDEC013937 I 0.000
LotgiG119241 Lottia gigantea LotgiG119241 I 0.000
LCUP015520 Lucilia cuprina LCUP015520 I 0.000
PHUM413310 Pediculus humanus PHUM413310 I 0.000
B_00892 Schistosoma haematobium B_00892 I 0.000
Sjc_0091950 Schistosoma japonicum Sjc_0091950 I 0.000
TsM_000018800 Taenia solium TsM_000018800 I 0.000
TC003000 Tribolium castaneum TC003000 I 0.000
L798_06214 Zootermopsis nevadensis L798_06214 I 0.000