irx5b (Danio rerio)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSDARG00000074070 T208693_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.858 0.947
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.858 0.947
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.858 0.947
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.858 0.947
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.858 0.947
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.858 0.947
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.814 0.912
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.814 0.912
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.814 0.912
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.806 0.877
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.806 0.877
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.806 0.877
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.772 0.842
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.772 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000031421 Homeodomain 106 165

Links

Other Homeodomain family TFs
Other Danio rerio TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
maker-pag1_scaffold_223-fgenesh-gene-0.6 Pythium aphanidermatum maker-pag1_scaffold_223-fgenesh-gene-0.6 N 0.000
maker-pag1_scaffold_223-snap-gene-0.15 Pythium aphanidermatum maker-pag1_scaffold_223-snap-gene-0.15 N 0.000
maker-pag1_scaffold_73-snap-gene-0.36 Pythium aphanidermatum maker-pag1_scaffold_73-snap-gene-0.36 N 0.000
fgenesh-par_contig_48-abinit-gene-0.93 Pythium arrhenomanes fgenesh-par_contig_48-abinit-gene-0.93 N 0.000
maker-pir_contig_839-snap-gene-0.8 Pythium irregulare maker-pir_contig_839-snap-gene-0.8 N 0.000
PYU1_G006823 Pythium ultimum PYU1_G006823 I 0.000
PYU1_G006824 Pythium ultimum PYU1_G006824 N 0.000
maker-pve_contig_301-fgenesh-gene-0.2 Pythium vexans maker-pve_contig_301-fgenesh-gene-0.2 N 0.000
maker-pve_contig_301-fgenesh-gene-0.3 Pythium vexans maker-pve_contig_301-fgenesh-gene-0.3 N 0.000
SU7_1907 Saccharomyces arboricola SU7_1907 I 0.000
SPRG_11849 Saprolegnia parasitica SPRG_11849 N 0.000
SPRG_14745 Saprolegnia parasitica SPRG_14745 N 0.000
SPRG_14746 Saprolegnia parasitica SPRG_14746 N 0.000
SPRG_14762 Saprolegnia parasitica SPRG_14762 N 0.000
SPRG_14763 Saprolegnia parasitica SPRG_14763 N 0.000