CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSLACG00000012621 *(Latimeria chalumnae)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	ENSLACG00000012621	T210851_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Six2 M00425_2.00	Mus musculus	NNAYMYNN	NNRKRTNN	PBM Berger et al.(2008) Six2_2307	0.866	0.982
SIX2 M05285_2.00	Homo sapiens	NNYGATACSB	VSGTATCRNN	SELEX Yin et al.(2017) SIX2_eDBD_HT-SELEX	0.866	0.982
SIX2 M05287_2.00	Homo sapiens	NSGTRWCRYN	NRYGWYACSN	SELEX Yin et al.(2017) SIX2_FL_HT-SELEX	0.866	0.982
SIX2 M08133_2.00	Homo sapiens	NNNTGWAACCTGAKMH	DKMTCAGGTTWCANNN	ChIP-seq Mathelier et al.(2014) MA1119.1	0.866	0.982
SIX2 M09157_2.00	Homo sapiens	DGWAAYHHGABMH	DKVTCDDRTTWCH	Misc Kulakovskiy et al.(2013) SIX2_HUMAN.H11MO.0.A	0.866	0.982
Six2 M09185_2.00	Mus musculus	DGWAAYHYRABMYB	VRKVTYRDRTTWCH	Misc Kulakovskiy et al.(2013) SIX2_MOUSE.H11MO.0.A	0.866	0.982
SIX2 M05286_2.00	Homo sapiens	NBRTATCRNN	NNYGATAYVN	SELEX Yin et al.(2017) SIX2_eDBD_Methyl-HT-SELEX	0.866	0.982
SIX2 M05288_2.00	Homo sapiens	VBRTAWCRNN	NNYGWTAYVB	SELEX Yin et al.(2017) SIX2_FL_Methyl-HT-SELEX	0.866	0.982
so M02117_2.00	Drosophila melanogaster	NDATMYNNN	NNNRKATHN	PBM Weirauch et al.(2014) pTH5690	0.866	0.945
so M03800_2.00	Drosophila melanogaster	NYGATAYB	VRTATCRN	SELEX Nitta et al.(2015) so_1	0.866	0.945
so M03801_2.00	Drosophila melanogaster	YKATAYNNNYGATAY	RTATCRNNNRTATMR	SELEX Nitta et al.(2015) so_2	0.866	0.945
so M03802_2.00	Drosophila melanogaster	YGATACGTATCR	YGATACGTATCR	SELEX Nitta et al.(2015) so_3	0.866	0.945
so M03803_2.00	Drosophila melanogaster	RTATCRYGATAC	GTATCRYGATAY	SELEX Nitta et al.(2015) so_4	0.866	0.945
so M06497_2.00	Drosophila melanogaster	TGATAC	GTATCA	B1H Mathelier et al.(2014) MA0246.1	0.866	0.945
so M06268_2.00	Drosophila melanogaster	NRTGATA	TATCAYN	B1H Zhu et al.(2011) So_Cell_FBgn0003460	0.866	0.945
so M06269_2.00	Drosophila melanogaster	NNNTGATA	TATCANNN	B1H Zhu et al.(2011) So_SOLEXA_FBgn0003460	0.866	0.945
Six1 M00512_2.00	Mus musculus	NNDATMYNNN	NNNRKATHNN	PBM Berger et al.(2008) Six1_0935	0.864	0.964
SIX1 M05094_2.00	Homo sapiens	NNYGATACVB	VBGTATCRNN	SELEX Yin et al.(2017) SIX1_eDBD_HT-SELEX	0.864	0.964
SIX1 M05096_2.00	Homo sapiens	NNYGATAYVB	VBRTATCRNN	SELEX Yin et al.(2017) SIX1_FL_HT-SELEX	0.864	0.964
SIX1 M08130_2.00	Homo sapiens	GWAACCTGANM	KNTCAGGTTWC	ChIP-seq Mathelier et al.(2014) MA1118.1	0.864	0.964
SIX1 M09142_2.00	Homo sapiens	DGWAAYHTGABMYN	NRKVTCADRTTWCH	Misc Kulakovskiy et al.(2013) SIX1_HUMAN.H11MO.0.A	0.864	0.964
Six1 M09579_2.00	Mus musculus	GWAAYHTGABMH	DKVTCADRTTWC	Misc Heinz et al.(2010) Myoblast-Six1_GSE20150	0.864	0.964
SIX1 M10684_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SIX1_Q3_01	0.864	0.964
SIX1 M10685_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SIX1_Q3	0.864	0.964
SIX1 M05095_2.00	Homo sapiens	NNYGATABNB	VNVTATCRNN	SELEX Yin et al.(2017) SIX1_eDBD_Methyl-HT-SELEX	0.864	0.964
SIX1 M05097_2.00	Homo sapiens	NNYGATAYSB	VSRTATCRNN	SELEX Yin et al.(2017) SIX1_FL_Methyl-HT-SELEX	0.864	0.964
Six4 M00461_2.00	Mus musculus	NNKABMHNN	NNDKVTMNN	PBM Berger et al.(2008) Six4_2860	0.708	0.709
SIX4 M04939_2.00	Homo sapiens	NVYGATACVB	VBGTATCRBN	SELEX Yin et al.(2017) SIX4_eDBD_HT-SELEX	0.708	0.709
Six4 M09198_2.00	Mus musculus	DGDAABHNSASNNN	NNNSTSNDVTTHCH	Misc Kulakovskiy et al.(2013) SIX4_MOUSE.H11MO.0.C	0.708	0.709
SIX4 M10646_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SIX4_Q3	0.708	0.709
SIX4 M04940_2.00	Homo sapiens	NBGTAWCRHN	NDYGWTACVN	SELEX Yin et al.(2017) SIX4_eDBD_Methyl-HT-SELEX	0.708	0.709
Six4 M00563_2.00	Drosophila melanogaster	NNDANMHNN	NNDKNTHNN	PBM Busser et al.(2012a) Six4	0.708	0.673
Six4 M06530_2.00	Drosophila melanogaster	TGABAC	GTVTCA	B1H Mathelier et al.(2014) MA0204.1	0.708	0.673
Six4 M06334_2.00	Drosophila melanogaster	WDDTGABAC	GTVTCAHHW	B1H Zhu et al.(2011) Six4_Cell_FBgn0027364	0.708	0.673
Six4 M06335_2.00	Drosophila melanogaster	NTGAKACB	VGTMTCAN	B1H Zhu et al.(2011) Six4_SOLEXA_2_FBgn0027364	0.708	0.673
Six4 M06336_2.00	Drosophila melanogaster	NNNTGABA	TVTCANNN	B1H Zhu et al.(2011) Six4_SOLEXA_FBgn0027364	0.708	0.673
SIX5 M08208_2.00	Homo sapiens	GARWTGTAGT	ACTACAWYTC	ChIP-seq Contrino et al.(2012) Mv121	0.708	0.655
SIX5 M08209_2.00	Homo sapiens	GGAGTTGT	ACAACTCC	ChIP-seq Contrino et al.(2012) Mv123	0.708	0.655
SIX5 M10738_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SIX5_01	0.708	0.655
SIX5 M10739_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SIX5_02	0.708	0.655
ceh-34 M00672_2.00	Caenorhabditis elegans	NNNRDAWNNN	NNNWTHYNNN	PBM Narasimhan et al.(2015) pTH9708	0.664	0.618
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSLACP00000014341	Homeodomain	126	180	TSYCFKEKSRSVLREWYIHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA

Links
Other Homeodomain family TFs
Other *Latimeria chalumnae* TFs

540 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
F775_07298	Aegilops tauschii	F775_07298	N	0.000
F775_08202	Aegilops tauschii	F775_08202	N	0.000
F775_17323	Aegilops tauschii	F775_17323	N	0.000
F775_17324	Aegilops tauschii	F775_17324	N	0.000
F775_29696	Aegilops tauschii	F775_29696	N	0.000
Aquca_075_00033	Aquilegia coerulea	Aquca_075_00033	N	0.000
BRADI1G30140	Brachypodium distachyon	BRADI1G30140	N	0.000
Bo9g024230	Brassica oleracea	Bo9g024230	N	0.000
Ciclev10028931m.g	Citrus clementina	Ciclev10028931m.g	N	0.000
orange1.1g024365m.g	Citrus sinensis	orange1.1g024365m.g	N	0.000
Eucgr.I01416	Eucalyptus grandis	Eucgr.I01416	N	0.000
gene07554-v1.0-hybrid	Fragaria vesca	gene07554-v1.0-hybrid	N	0.000
GLYMA11G16050	Glycine max	GLYMA11G16050	N	0.000
MLOC_13410	Hordeum vulgare	MLOC_13410	N	0.000
MLOC_60894	Hordeum vulgare	MLOC_60894	N	0.000
LPERR01G29490	Leersia perrieri	LPERR01G29490	N	0.000
LPERR05G17340	Leersia perrieri	LPERR05G17340	N	0.000
LPERR06G23100	Leersia perrieri	LPERR06G23100	N	0.000
LPERR11G02130	Leersia perrieri	LPERR11G02130	N	0.000
LPERR12G02240	Leersia perrieri	LPERR12G02240	N	0.000
Lus10014121.g	Linum usitatissimum	Lus10014121.g	N	0.000
Lus10016368.g	Linum usitatissimum	Lus10016368.g	N	0.000
MDP0000190186	Malus domestica	MDP0000190186	N	0.000
MDP0000893802	Malus domestica	MDP0000893802	N	0.000
MDP0000898701	Malus domestica	MDP0000898701	N	0.000
cassava766.valid.m1	Manihot esculenta	cassava766.valid.m1	N	0.000
cassava767.valid.m1	Manihot esculenta	cassava767.valid.m1	N	0.000
cassava7721.valid.m1	Manihot esculenta	cassava7721.valid.m1	N	0.000
mgf003848m	Mimulus guttatus	mgf003848m	N	0.000
GSMUA_Achr4G00320_001	Musa acuminata	GSMUA_Achr4G00320_001	N	0.000
GSMUA_Achr7G03840_001	Musa acuminata	GSMUA_Achr7G03840_001	N	0.000
OBART01G34150	Oryza barthii	OBART01G34150	N	0.000
OBART05G21450	Oryza barthii	OBART05G21450	N	0.000
OBART06G27540	Oryza barthii	OBART06G27540	N	0.000
OBART11G02390	Oryza barthii	OBART11G02390	N	0.000
OBART12G02110	Oryza barthii	OBART12G02110	N	0.000
OB0044G10110	Oryza brachyantha	OB0044G10110	N	0.000
OB01G42980	Oryza brachyantha	OB01G42980	N	0.000
OB06G35370	Oryza brachyantha	OB06G35370	N	0.000
OB12G12480	Oryza brachyantha	OB12G12480	N	0.000
ORGLA01G0280700	Oryza glaberrima	ORGLA01G0280700	N	0.000
ORGLA05G0186200	Oryza glaberrima	ORGLA05G0186200	N	0.000
ORGLA06G0232500	Oryza glaberrima	ORGLA06G0232500	N	0.000
OGLUM01G38420	Oryza glumaepatula	OGLUM01G38420	N	0.000
OGLUM05G22660	Oryza glumaepatula	OGLUM05G22660	N	0.000
OGLUM06G28970	Oryza glumaepatula	OGLUM06G28970	N	0.000
OGLUM11G02090	Oryza glumaepatula	OGLUM11G02090	N	0.000
BGIOSGA004628	Oryza indica	BGIOSGA004628	N	0.000
BGIOSGA017801	Oryza indica	BGIOSGA017801	N	0.000
BGIOSGA020526	Oryza indica	BGIOSGA020526	N	0.000
BGIOSGA034759	Oryza indica	BGIOSGA034759	N	0.000
BGIOSGA036957	Oryza indica	BGIOSGA036957	N	0.000
OLONG_011776	Oryza longistaminata	OLONG_011776	N	0.000
OLONG_016758	Oryza longistaminata	OLONG_016758	N	0.000
OLONG_023558	Oryza longistaminata	OLONG_023558	N	0.000
OMERI01G30960	Oryza meridionalis	OMERI01G30960	N	0.000
OMERI06G27590	Oryza meridionalis	OMERI06G27590	N	0.000
OMERI12G01070	Oryza meridionalis	OMERI12G01070	N	0.000
ONIVA01G38950	Oryza nivara	ONIVA01G38950	N	0.000
ONIVA05G22130	Oryza nivara	ONIVA05G22130	N	0.000
ONIVA06G30110	Oryza nivara	ONIVA06G30110	N	0.000
ONIVA11G02620	Oryza nivara	ONIVA11G02620	N	0.000
OPUNC01G33180	Oryza punctata	OPUNC01G33180	N	0.000
OPUNC05G19110	Oryza punctata	OPUNC05G19110	N	0.000
OPUNC06G25210	Oryza punctata	OPUNC06G25210	N	0.000
OPUNC12G02170	Oryza punctata	OPUNC12G02170	N	0.000
ORUFI01G37470	Oryza rufipogon	ORUFI01G37470	N	0.000
ORUFI05G22690	Oryza rufipogon	ORUFI05G22690	N	0.000
ORUFI06G29500	Oryza rufipogon	ORUFI06G29500	N	0.000
ORUFI12G02510	Oryza rufipogon	ORUFI12G02510	N	0.000
OS01G0801901	Oryza sativa	OS01G0801901	N	0.000
OS05G0495200	Oryza sativa	OS05G0495200	N	0.000
OS06G0716800	Oryza sativa	OS06G0716800	N	0.000
OS11G0139500	Oryza sativa	OS11G0139500	N	0.000
Pavir.Ea03172	Panicum virgatum	Pavir.Ea03172	N	0.000
Pavir.Eb03174	Panicum virgatum	Pavir.Eb03174	N	0.000
Pavir.J00911	Panicum virgatum	Pavir.J00911	N	0.000
Pavir.J05283	Panicum virgatum	Pavir.J05283	N	0.000
Pavir.J21984	Panicum virgatum	Pavir.J21984	N	0.000
Pavir.J25286	Panicum virgatum	Pavir.J25286	N	0.000
PDK_20s1365351g001	Phoenix dactylifera	PDK_20s1365351g001	N	0.000
PDK_20s1623091g001	Phoenix dactylifera	PDK_20s1623091g001	N	0.000
gw1.34.187.1	Physcomitrella patens	gw1.34.187.1	N	0.000
POPTR_0001s05750	Populus trichocarpa	POPTR_0001s05750	N	0.000
POPTR_0003s20320	Populus trichocarpa	POPTR_0003s20320	N	0.000
POPTR_0009s13730	Populus trichocarpa	POPTR_0009s13730	N	0.000
Pm016548	Prunus mume	Pm016548	N	0.000
Pm020862	Prunus mume	Pm020862	N	0.000
PRUPE_ppa009913mg	Prunus persica	PRUPE_ppa009913mg	N	0.000
PRUPE_ppa019868mg	Prunus persica	PRUPE_ppa019868mg	N	0.000
28095.m000094	Ricinus communis	28095.m000094	N	0.000
SapurV1A.0009s0600	Salix purpurea	SapurV1A.0009s0600	N	0.000
SapurV1A.0445s0220	Salix purpurea	SapurV1A.0445s0220	N	0.000
SapurV1A.0923s0130	Salix purpurea	SapurV1A.0923s0130	N	0.000
SELMODRAFT_409920	Selaginella moellendorffii	SELMODRAFT_409920	N	0.000
SELMODRAFT_414462	Selaginella moellendorffii	SELMODRAFT_414462	N	0.000
Si002893m.g	Setaria italica	Si002893m.g	N	0.000
Si007107m.g	Setaria italica	Si007107m.g	N	0.000
Si037105m.g	Setaria italica	Si037105m.g	N	0.000
Sb09g024290	Sorghum bicolor	Sb09g024290	N	0.000
Sb10g030250	Sorghum bicolor	Sb10g030250	N	0.000
TCM_042360	Theobroma cacao	TCM_042360	N	0.000
Traes_1AL_00A8A2030	Triticum aestivum	Traes_1AL_00A8A2030	N	0.000
Traes_5AS_6F02C9967	Triticum aestivum	Traes_5AS_6F02C9967	N	0.000
Traes_5BS_FC54F9BEA	Triticum aestivum	Traes_5BS_FC54F9BEA	N	0.000
Traes_5DS_4F7973584	Triticum aestivum	Traes_5DS_4F7973584	N	0.000
Traes_7AL_A8CAE984E	Triticum aestivum	Traes_7AL_A8CAE984E	N	0.000
Traes_7AL_C7CF7087B	Triticum aestivum	Traes_7AL_C7CF7087B	N	0.000
Traes_7BL_096916DC5	Triticum aestivum	Traes_7BL_096916DC5	N	0.000
Traes_7DL_70D4FDB2A	Triticum aestivum	Traes_7DL_70D4FDB2A	N	0.000
Traes_7DL_7DDA16622	Triticum aestivum	Traes_7DL_7DDA16622	N	0.000
TRIUR3_01653	Triticum urartu	TRIUR3_01653	N	0.000
TRIUR3_12850	Triticum urartu	TRIUR3_12850	N	0.000
TRIUR3_17772	Triticum urartu	TRIUR3_17772	N	0.000
TRIUR3_23486	Triticum urartu	TRIUR3_23486	N	0.000
VIT_03s0038g02420	Vitis vinifera	VIT_03s0038g02420	N	0.000
ATBZIP24	Vitis vinifera	VIT_13s0158g00380	N	0.000
GRMZM2G000171	Zea mays	GRMZM2G000171	N	0.000
GRMZM2G055413	Zea mays	GRMZM2G055413	N	0.000
GRMZM2G175870	Zea mays	GRMZM2G175870	N	0.000

ENSLACG00000012621 (Latimeria chalumnae) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

540 Related TFs

ENSLACG00000012621 **(Latimeria chalumnae)
Homeodomain**