IRX4 (Macaca mulatta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSMMUG00000004220 T211886_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.867 1.000
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.790 0.929
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.788 0.929
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.788 0.929
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.788 0.929
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.780 0.893
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.780 0.893
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.780 0.893
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.780 0.893
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.780 0.893
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.780 0.893
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.780 0.893
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.780 0.893
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.780 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000005641 Homeodomain 142 200

Links

Other Homeodomain family TFs
Other Macaca mulatta TFs

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00026p00180130 Amborella trichopoda AMTR_s00026p00180130 I 0.000
fgenesh1_pm.C_scaffold_2001935 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2001935 N 0.000
ERF084 Arabidopsis thaliana AT1G80580 N 0.000
Bostr.20129s0456 Boechera stricta Bostr.20129s0456 N 0.000
Bostr.15697s0157 Boechera stricta Bostr.15697s0157 I 0.000
Bo2g095830 Brassica oleracea Bo2g095830 N 0.000
Bra008460 Brassica rapa Bra008460 N 0.000
Cagra.1725s0082 Capsella grandiflora Cagra.1725s0082 N 0.000
Carubv10022119m.g Capsella rubella Carubv10022119m.g N 0.000
evm.TU.supercontig_10.125 Carica papaya evm.TU.supercontig_10.125 I 0.000
Ca_20041 Cicer arietinum Ca_20041 I 0.000
Cla015583 Citrullus lanatus Cla015583 I 0.000
Ciclev10027171m.g Citrus clementina Ciclev10027171m.g I 0.000
orange1.1g047950m.g Citrus sinensis orange1.1g047950m.g I 0.000
Cucsa.105790 Cucumis sativus Cucsa.105790 I 0.000
Eucgr.F03941 Eucalyptus grandis Eucgr.F03941 N 0.000
Thhalv10019474m.g Eutrema salsugineum Thhalv10019474m.g N 0.000
Thhalv10000556m.g Eutrema salsugineum Thhalv10000556m.g N 0.000
gene15953-v1.0-hybrid Fragaria vesca gene15953-v1.0-hybrid I 0.000
GLYMA07G03041 Glycine max GLYMA07G03041 I 0.000
GLYMA08G23074 Glycine max GLYMA08G23074 I 0.000
Gorai.009G125700 Gossypium raimondii Gorai.009G125700 N 0.000
Gorai.006G107500 Gossypium raimondii Gorai.006G107500 I 0.000
Lus10026053.g Linum usitatissimum Lus10026053.g N 0.000
Lus10014345.g Linum usitatissimum Lus10014345.g N 0.000
MDP0000264187 Malus domestica MDP0000264187 I 0.000
cassava38416.m1 Manihot esculenta cassava38416.m1 I 0.000
MTR_4g009260 Medicago truncatula MTR_4g009260 I 0.000
mgf023662m Mimulus guttatus mgf023662m I 0.000
e_gw1.15.234.1 Physcomitrella patens e_gw1.15.234.1 N 0.000
fgenesh1_pg.scaffold_23000002 Physcomitrella patens fgenesh1_pg.scaffold_23000002 I 0.000
gw1.204.54.1 Physcomitrella patens gw1.204.54.1 N 0.000
gw1.340.39.1 Physcomitrella patens gw1.340.39.1 N 0.000
e_gw1.145.79.1 Physcomitrella patens e_gw1.145.79.1 N 0.000
e_gw1.14.213.1 Physcomitrella patens e_gw1.14.213.1 N 0.000
POPTR_0017s08090 Populus trichocarpa POPTR_0017s08090 I 0.000
POPTR_0001s32050 Populus trichocarpa POPTR_0001s32050 I 0.000
POPTR_0013s15440 Populus trichocarpa POPTR_0013s15440 I 0.000
Pm013734 Prunus mume Pm013734 I 0.000
PRUPE_ppa020928mg Prunus persica PRUPE_ppa020928mg I 0.000
27446.m000475 Ricinus communis 27446.m000475 I 0.000
SapurV1A.0058s0710 Salix purpurea SapurV1A.0058s0710 I 0.000
SapurV1A.1000s0130 Salix purpurea SapurV1A.1000s0130 I 0.000
SELMODRAFT_428344 Selaginella moellendorffii SELMODRAFT_428344 N 0.000
SELMODRAFT_412693 Selaginella moellendorffii SELMODRAFT_412693 N 0.000
SELMODRAFT_417258 Selaginella moellendorffii SELMODRAFT_417258 N 0.000
SELMODRAFT_428599 Selaginella moellendorffii SELMODRAFT_428599 N 0.000
Solyc03g117230.1 Solanum lycopersicum Solyc03g117230.1 N 0.000
PGSC0003DMG400010135 Solanum tuberosum PGSC0003DMG400010135 N 0.000
TCM_027348 Theobroma cacao TCM_027348 I 0.000
VIT_09s0002g08830 Vitis vinifera VIT_09s0002g08830 I 0.000